LOCUS UQS85334.1 559 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae DAK2 domain-containing protein protein.
ACCESSION CP093362-323
PROTEIN_ID UQS85334.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_01720"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010021511.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSVSNITSSK FNQMVQAASV TLKSNSKFIN SLNVFPVPDG DTGTNMSMSF ESGAKYVEQD
61 SSDSVGDLAQ SLSKGLLMGA RGNSGVILSQ IFRGFSKSVQ DKKELKSEDI VEAFINSAKT
121 AYNSVMKPTE GTILTVIKGI AQAGKESKHS DLADLFDDLY NGANMALQTT PDLLAVLKEV
181 GVVDSGGQGL VFVIKAFSDV LNNRKIDESH QPNSGEMNQM IDASHEQSNE SAQGKLNPSD
241 IKYGYCTQIM VRIGLGQQVK YDFDYDKFYE YLAKLGDSLL VINDDEIVKV HVHTEHPGKV
301 LAWGQLFGDL ANVKVDNMRL QQEDIIEKDE KKEQADLKSE PKETAIISIV SGDGLGELFS
361 SLGVTDIIKG GQTMNPSTQD IVNAINNSNA KNAIILPNNG NIFMAAEQAT QVVDIPAKIV
421 HTKTLQQGLT SVLSFNPTAS LDDNVNEMED TLDTVKSGEV TYAVRDTNIN GVDIKKGHFM
481 GIVDGDIKVT GKNSVETTVN MVKDMLDEDS EVITIIYGKE SNEKDANKVK SKLETIDSEL
541 EVEVHEGDQP VYSFLISVE
//