LOCUS UQS85296.1 832 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae YfhO family protein protein.
ACCESSION CP093362-284
PROTEIN_ID UQS85296.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_01520"
/inference="COORDINATES: protein motif:HMM:NF021126.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MFPFGNGSIL TVDLGQQYVD FFSFYKRTIN TLNFGNLFYS FSNGYGGEMT SIWSYYLMSP
61 LNLIIAILPK SFMNGSIMLI TLLKYGLSGL SFGYLIKTKK VKNNLTIPIF ATSYAMNGWI
121 IANQLNIIWL DAMIILPIII LGIDNIIKKN SYKVYLISLT AIIIINYYMA FMICIFSCTY
181 FIANYVIKYS NINNKIKMIL KYIGTSLTAF LISSWLMIPN IIALKDGKGQ YTISNIKWKF
241 EYNPLDMISK SLNGAFNFDQ IPSGYPNIFI GSIALISMIS FFFNHNIRIK KRVIYFLLLS
301 FLIISMSFEP LDLLWHAFQF PVWYPYRFSF ITCFLIAYLG AIGFNSLPKE INITLIIKVS
361 VILVAGMLYV GVNINRFTFL SIEKYIISLL ILAITFLIIM LINKKTFKYY LLSLLIITIC
421 DMGINTFNSL NSISYVNNSD YTTYNKILSN KISSIQKNDN SFYRIGKSFY RTKNDPLENN
481 FNGGSVFSST LQKKNTEFES KIGIPFNSGS IDYSNGTLFT DSLLSFKYII NMDNGFKKYP
541 MIQQSGKRYD VINNKVNNDF NSYKNNNYFP IIYETNQNSL KKIKTNDDPL NYQNNIFKSL
601 SNSNKNIFNF NNDYKVTFNN VYNTKSLNKS VVKKKNLLKP ASIDIKYNYT DGNIPYLLLS
661 GNFNKDNCSI FVNGNSVIVP KTFSNSIVIS LPKQNSTIDI NFKKASLYSN DFGLYNLNYN
721 QFKKDTNYIH NQRNNIKFNN NNISADLNFN KKGNILTSIP YSMGWHLVID GHESKISPWL
781 NEFIGSSKMV SRGKHKVFLY YYPSGLNIGI IMTIIGISIL LVNLIINKKK YK
//