LOCUS       UQS85082.1               950 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae excinuclease ABC subunit UvrA protein.
ACCESSION   CP093362-60
PROTEIN_ID  UQS85082.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /gene="uvrA"
                     /locus_tag="MOO46_00305"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010620571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003677 - DNA binding [Evidence IEA]; GO_function:
                     GO:0005524 - ATP binding [Evidence IEA]; GO_function:
                     GO:0016887 - ATP hydrolysis activity [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MQNDKIIIKG ARAHNLKNIN VEIPKNKLTV MTGLSGSGKS SLAFDTLYAE GQRRYVESLS
       61 SYARQFLGQM DKPDVDSIEG LSPAIAIDQK TTSHNPRSTV GTVTEINDYF RLLWARVGTP
      121 ICPNDGTKIT RQSIDQMIDE IMALPERTKL QILSPVVRES RGQHKKTFDK IQREGFVRYR
      181 LDGEIHEIGD GIVPEKSKKH NIDIVVDRII VKDGIKSRLS DSLETALRLS GGYATADLMG
      241 KGDNLIFSEH YACPLCGFTI SELEPRLFSF NSPIGACPDC DGLGMKLDVD ESLVIPDKNK
      301 TLKDGAIDPW NPISSKFYPS LLEQACDAFN IDMDIPFKKL PKKKRDLILN GSNGKEFHFH
      361 FDSSFGGVRD TDAPFEGVLR NISRRYNSTN SDFTREQMRK YMTELTCQTC NGYRLNREAL
      421 SVKIDGQNIS EITNLDINKE LAFFKQLTFG EKDTTIAKPI LKEIIDRLSF LRNVGLDYLT
      481 LSRTAGTLSG GESQRIRLAT QIGSNLSGVL YVLDEPSIGL HQRDNDRLIK SLKSMRDLGN
      541 TLVVVEHGED TMLASDYIVD IGPGAGSNGG KVMAVGTPEE VANNDQSLTG QYLSGKKYIS
      601 VPLKRRKGNN KHIKVKGASE NNLKNVDVDI PLGEFNVITG VSGSGKSTLI NRVLKRALAQ
      661 KLNNNSEKPG KYKSISGYKN IDKLINIDQS PIGRTPRSNP ATYTGVFDDI RELFAETNEA
      721 KLRGYQKGRF SFNVKGGRCE TCHGDGILKI EMNFLPDVYV PCEVCHGKRY NNETLEVQYK
      781 GKNIADVLDM TVKDALSFFE AMPKITRKLK TINEVGLGYV KLGQSATTLS GGEAQRMKLA
      841 AELYKKSAGN NLYILDEPTI GLHTDDIKRL LVVLHELVDQ GNTILIIEHN LDVIKTADHI
      901 IDLGPEGGEG GGNIIATGTP EEIIKVKNSY TGQYLSPILK RDLKRTKDDK
//