LOCUS UQS84951.1 593 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae YfhO family protein protein.
ACCESSION CP093362-1299
PROTEIN_ID UQS84951.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_06825"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/transl_table=11
BEGIN
1 MQNIKKLTSK IFSYKITPLI IFIIMALLMV SRQIWTHTLF FGADSLFHFN RFYDTAMQLK
61 SGHFSYFQTN YGFMQSGRIL SALYGPIIAY LGGAILLLCG TWFKFQIVLN LLVLVTAGLT
121 MYRLNIHNHV SRGYAMIIAV IYMYSSQIVQ WVTSQQFTAF GAALLPLLIL SGTRALREHD
181 VSVIGLALSM SLLIQTHLMS SMIGAIGILP LFIVGLVTAT DKWKLVRHTL YAAGLTILLT
241 INIWYNLIVI SAQNKLLSVY PVHYLRTYGF NFDLYSITNI FKPTEVILFL FVIGFVIYRW
301 KKLELITKTL TVTGLGFMIV SSSHFPWGLL QRFIPSLTYT LQFPKRFLVL PFIMILLALG
361 MIMTFESQTN QAFFQKEKWW RLIMVVVIIF GSLGLDFYSM NERIYRYDRT AEGHNESNYH
421 DSSLYYYFGK HHRNVRSDID SPHLGHLIND YLKASPDYLP VKQSIKGFNE YNAFNPYDLD
481 YHQYIGKNQV THFKHRVWPN GSLSVAWHSP QQKWTQVPLV KYANTKVTLN GNVLKKVHTT
541 NLGAIVVHAK AGHNRVTIKY QTSFMTRLMM VICMLSWLAL LFYFIISKIV TKI
//