LOCUS UQS84932.1 3371 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae DUF5776 domain-containing protein
protein.
ACCESSION CP093362-1279
PROTEIN_ID UQS84932.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_06725"
/inference="COORDINATES: protein motif:HMM:NF039855.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MQYNKNKFNK VNDKKLLKKV KKEWVVVSIA SLSVISGFAI SGSLPLSKTS NNVYADTLVN
61 EKNSNQLDTS QNNENSDPGK DTHDTSSVKK TQSITAPSSE RDNQTLKVSD ASGAGNLNED
121 KMTMSASSNN FDDSKVAPSS SNNQVGDSKL TETAKAGSQS YSNGESKPST NDNDQQAQYD
181 AASNGFNDKL KQGNTTNDSQ ANTAQPDAYQ QGQNLADQYK NEMNQGAQDY INNKKTDYTD
241 QTQQNYYNAS YSGAQTASNA YNQSTSNQGT NGNYDSYNKA SGQSYTDYSS KNTAKLNSQN
301 NSSVRLNGSS VNVPSSDSQI INDDKKNDNS VAQNYAGQGV YNDAFRYGIN YFLANQGAND
361 AKSGKWQGTN YNQNSSNYGN TAKITKDFYD SNINGGTYDS AKSDAYYQAY EGAKRGIANQ
421 FKADNTYNTG FIGSNSNSTN NDYTNAYNSV VNDNKNGIVY VRNAQQMNYV VTGVTSGTGV
481 NNSLNMLYNN NSSINKPLIN TINLVNDVNL QDVTTGNSGS GGTNPYTNTN LTINGQNHIA
541 DFYGMQYCLQ YQGSNSYNFN IKNFQTVYGI NYYGPFAASS GSIYFDNFNY VGPQMLQSTN
601 NNVYINGNVN AYQNLGSSNT YNSPFQQNAK MDGSGNQQIL AINNLTLGEN SNFFGDVSNN
661 TGGTNVQLNG NLTLGVDSNM NLISRGSGGD GAANNGNAGV YLTSSSSKLN VNKGSNLNID
721 TQKAGSTYGS AIYSSGGQIN VNNANINITL NGNNTNSLPV YFAGGNVLVQ NGGAINVIAN
781 GVNNSSGILY NSGGKINIVN GGNLTMDATN STNSALIYGN VSVNNPGLSG VNLKVNNDGS
841 TILESGASIT ANTINVNDVN YYMYNLNGNG NNNLTTIDQT NNNNNGVVPT SFKGDSLLIS
901 RVPAAYFVGP VNVSYDSQSK QTTITGNAKI SGTYNNGDKT IYIKYSDNNN TDISNPTISQ
961 TTNNNNGDTT KFNQSMEVED NGQLIPFKFI YNTNISPTSV TVLLKYGVSG INLKYNTANN
1021 PSTPNVSTTP GGYAMNVLNY SDDANKNLTS NLTQVSTGNE GDVNNGASDA MIINSGGNTV
1081 KPNPTTMSNN NDYSNGYNSA AAGYQAFVDQ LSNNSVDPTT LNYQNNESYK NDYANSGYAD
1141 QFEQGFNRAQ QDYQTGINDV KKSIANGQIT HTDSTATTSN GDTLSQINND SYQTAFRTFN
1201 NGYEYGINGS SSDGLNNQQM IGFNYGKNVL VGASADSLPT DTTDPNYQAQ KDGYQSAQQA
1261 RKDYYNNSNP QTQNITKPSD IKVLSSDNIP NIQVYQSAYY GAHLAGTGSN RPTDDLIAQN
1321 SYDAAKGKAS YLNGDEQPTT ANNSQSFVNG YNDIKQGYSD VIANGSNTKE KDTPSAEYDY
1381 GYQIAINSQT GYNKAADLGN PLPNSTLAGI SGNDKSAYKG YADAVQKIKS GNFSNSLNNH
1441 IAKGSNNDYY VLAYDKAIDI AILANNAGKN AFMSGGNSTT TDGSKTEQNV YTNAYNKSKD
1501 GFQDQLNNPN ASNNSNDVNY RDGVTLANNG MDGYTQAMND YHNNPNAYSY SPNASLNSSN
1561 QSAYKATIAG LQSANNQNDD NRGKRPTDYS SAFYDAAQAS ESGRIQAISS SKKNNLSNIN
1621 NSDSNANKYV MPRLYTNSYN AFINGYSYGQ NNPTDNSQSK DTNPINADAY NQGKTAGQQS
1681 QGASDYLNNK QPTNGGTTQY SNGYQYAKDG YQAGITGQPV TGITDAEKNS AEYQRAQAAG
1741 HNAKNYYQSG VNKAQSTTNP QSNSSDTPTN AVGKDAYNGA ADAINAVKRA DTDGTGVNNV
1801 PALDNKNSSN SIVYNNAYNE ALAEAQKANQ AGQNKALNNG KDTSYDSNVA NDDIYNNAQA
1861 KTKTGYSEGI NGEDTSKVPS NSNEAAGVDA GKAIQSSYNQ AVSDYNDAAD KKDAPDTTSK
1921 TGINADIYNN AIQGLKDADG NGNDPAVKTN KDNQNPIYGL ANSQELAKQV ASNVINNNAN
1981 NSKLNTIDNN NTDAKNSLNP DAYKAIYNAM INGYNDGQSN PTDNSKVSGD NQNNVDAYEK
2041 GRDAGQRSQA VADLLAGKAS VKNATDTYNE AYQYAKDGYQ AGITGQPVNG ITDAEKNSAE
2101 YQRAQETGKN AKNDYQNGIQ QAQDNANPNV NDSNAPKDND NSKAAYNAVA QALQDAKQAN
2161 VSGKGLDSVN DLGNDYNCNP VYRVAYNQAL NNIKAANKQA NSDFNAGKVL NENNVTPANN
2221 MTKAFYSDVY NNIQKGYQEG LSNPGMTEPI DSNEQNGFNK GKADSRGYVD AINDFNNGTR
2281 YDNSNPAKGE TEPSAKASYQ ETMKALTDAQ NGKNDNVNNT SVYSIANGQG LGAHNGLAAV
2341 KQNGGSVPNP IIVPSTPSGI NTTAYQDAYK GSYDGYNNKF DSSQINNMPY VNAFKQAAQQ
2401 KGADDYVAGK VTDDPTNEAN TKSEKEYDAN YANGVRDAQA AYAGDGNGNK NSNHNSNAYQ
2461 TGANALIDAD KGYDAAKTNA DIPDSDDTNV YNAYWGAQSG ANTGDKVPAN VNTNSVAYQT
2521 GKNKAQSDSS QGANQYLSDK IDGKSDLTPE GNNNLYNQGY NNQKAFEDGL NNTVGSDASK
2581 YPGNDGVKSA YQNGINASSG YKKGYQEAQV GNDKPSADAS VDSYNGSKAG YNDAKNSSGF
2641 HPDGNLTQKS AYAKAYEEAI QQMNAGAREV IVDGNKQPND NNQNHQAFNQ GYDNQKAYSA
2701 GVNDKVDHSN QYSGPSLVAY QNGQKAKEAI IGAGSDAISG KQNTNREVDP DSYDGAKSGY
2761 IDGLNGNNYN NISTKPASYQ QAYNNAYNDI QTDRANGAKE LFKQVSGLNV ENNSNVNGAK
2821 LPFDKPQNIH EQAQNNGFVE QQGYISGING GSTKDNPYTD NPYKDIYNQG LQRSEITKTG
2881 YQAAQANGNP SVNDSPIKNS NGKEITDNNA LEGYKAVAQA YQDVKANKPQ SNNTNQSIEY
2941 QMAYDHAYNM YNGVKAKGVS DFTKDPSAQV NNPYDKADTQ TAKNLYNQSN EAARDGYNSV
3001 MNPSQDKASD KNNVDYIAGQ KLANSLLDGI KAAANSDKNA PSDNVAKAGY DAANAAIKNG
3061 VNDAKKSNSK NKVDPAKVVV PTDIPSDARQ AYLNAYEGAY NGYISGYNNG LQNPNESQDS
3121 QYNSLPVYKA IYDATFKQGK SDIPAPATSG SIEIPIDNSG HQFVKPNKSA NNNQKTISAT
3181 QKAGELAGYK DGLMRKFNAK ALKKYSSEYV KAYNNAFRKA FQKHMPRYIY NLKGMYLHNS
3241 KGFNKNTRVK GYSRVTRALA HVFRVLGISY SKNGLPRYRV SGGYITANYK YIADAYYRGN
3301 KVNERVRVIK PKGTHVYSSK QFNKHTIVKK IPKNSIIRVQ KVEKLGYITR FYIGNGQYIS
3361 SNKTIVKKLG E
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