LOCUS UQS84930.1 3145 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae DUF5776 domain-containing protein
protein.
ACCESSION CP093362-1277
PROTEIN_ID UQS84930.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_06715"
/inference="COORDINATES: protein motif:HMM:NF039855.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MQYNKKQFNK VNDKKIMKKV KKQWVVVSMA SLAVLGGFAV SGTLSMTQPS SVVAHADDGT
61 SDSTVQSKQQ EEPQGETDQQ KASDATKKDA SSANNKASTN VDNKKGDAPY TPDHENVAVN
121 SSGKSSTLPN GSNAGSGSTT QPQTSNNTQG PNQGAKNYEG ASSNSTDNDG NQKDYDKTKD
181 GFNDKLNNQN QDKSNSDKQD NTGKKDSYDY GAQLANDNKT IIDQGAQDAI NGKVKDDQYK
241 DNNYYNSSYD GSNQAKADYN NSINNQGTSD KDYTSYDNSV SDSQNNSKKD GGANTNSSSN
301 ISNDDHSGGA DNPSDASNSA KNYDSDLKKQ FNGTDANGKS TNSSVQNNDV RVPSDSNVSA
361 TTPQNTKLEG INADTYAYGY NYFLANQAAI DYESGKWKGT KASDNNGSNE SNSQNDPTHD
421 YYMDSQPDTK SAYYKGYQGA KTAAESQWTG NQASTKLSNT NGNISDVSLS ENQFYKIGYN
481 NVKNEINDNS TAFVSNGYQL DNLLSNNQVK SNVKIINDID YSNVNGIASN NANYTTVDKQ
541 ITPSGVINVN IDGQNHIADF KNMQYRFNPS DTNSQSSLSM NNFKTIYGNG YYGPVSFQTT
601 NSTINYKNIN YVGVQLISAR TTKVNFAGKN NVMLVDSYHS PFTTNVVVNT PQQNIEASNM
661 TLLPGASYYG DTNFQNLGGS DLVQVFNGGT LTLGRNSNMT LLTGGKSINN SSSGYNSGVY
721 IDNSDSTMNL NKESNLNVIY NKDYNFGGNY GSGIYNNGNI NSNGGNINIE FSGDSYGNNP
781 LIINKGKINV TNNGLMQIKL SNANGSYSSG LLNASTGNQF NIASGNLIID GSQNNQNPIT
841 LLNGSISVND PGNKGILLKT NENGQLVSSG TMNTSTVAVD DNRNNKQLYY QYNVNANGTI
901 TGISGNGKTY NGSTKGKNEV SIYRAPSVSV SGPVNAKYND DGTVTITGNL VVDRAEELDK
961 NDNGIYLRSK ADSNETNNTI QQRDFDDNTK YNNVIPNISN GTLVPFTQTV NGLSGKPDNV
1021 STTIKYGIQG ITINLHDKDD NYSKETIDAQ SYSNNPGENG GVSPDGSRPI QILNSDNSYA
1081 RRGIKDAIND KDFNSSNYKN NDLYNDNDLY ANSYNSAIAG YEAYVKKPDN NISDNYNTTD
1141 DNSYKIAKDK QATEAFDQGY QAAQSNAGTN DYIAGQSKDK SNYNGNSSSY KSGYDEASNG
1201 YKDGAEAKNA VADASNGYTK GYVAGKGTSD YLSGKDKNSS SVDQTQNNNV NQDIYNNAYD
1261 STKNGYNNTK DNQNTAYNYG KNMLNGMKAA NGNKGFNEPS DKDSSDYQAY NDGKNAYNGM
1321 NDALTGQNKG KNEDYKSNND EYNSAYEAAQ KGLTDSSNNP EKYTNPSPQY SAYEAGQAAR
1381 KGSTDAQADS YSNRPSEDSF AQKAYDNAKG NFNAGAGRSN GASTPDTNSQ AYKDGLAAQA
1441 GQQAATKGDK NGSYPNNSDG STYNDTQRTA YDNAKKAYNK GLTGDNTTGD AKADQAANNA
1501 GMSAKDGIDD AFSNGNPSND DKQKGPDTNS YDAAKRAAED GMNGQAKSNL DKQQQNAYDN
1561 GKAMYDGMQA AKQDNTNGLN HGELKQDKSS AYSNSYTEGS SQHSNYDKAY TAYKDGLAKI
1621 VDGKNENNDR PGQNPISDGN QNPNESTVPY QIAKDSETTD NAIHDAIYHT NTYRPSNNDK
1681 NQLTVYNQAQ DAYNAGLTQQ SNQSSVDHNQ GYAYNVGKDA LKGIQDAENG QQNEPGNPND
1741 QKDSQDKNTT YNKEAYDQAQ NDFKDGNKER NKLSSSNDHN TVDTSASLAY QTGQKYEATK
1801 SGIDKYVNNE DGPTLKNNDY SKTLNNGYNA YKAGYEGSNN GQPTETIKSD PSQMDAYNQG
1861 RAAQAAVKDA SSGKFGNDGS NRPLDSTQPN SSKNSSADSM YNSDDYKPSG ADWTTNQQTA
1921 YDNAYEAYLD GKKSPNSGSA PNGQKVAYNK GQGDGQLPEA INDAINGKTG NGDNDYSNNI
1981 KNFNYSLENS NKDSNSDDIH KAVDIVNKAI SDAKTTGNMS DGNLSPDQKN YYDNAFNAYQ
2041 YGFGKNSSDS SITTDNEKNN SIPYQIGLAA RKGIQDTKDV NGKTSYDKNG ANQVEKDAYT
2101 YAQSAYKSGL TGNPQPNNST QAFNEGQSDK SGIDAAIRGD SEPKDDSTEV SKVAYDATKA
2161 GLNNQNNAQN NYANNAGKAY QSGLSDAQST DNPDNSGKDL NKDHQSEYNQ AKKDYQDGLS
2221 AQSGNVNSNG YGEGLNDRAV KQGVKDASNG VAKEDGSSYT PVKQVDGKDI NNVDNQINAY
2281 KNAVNGFDYG YGNKSIDKDN SAYQSGEKAG KDAKQAVKDQ QSETKSTDAK SDSYNQAQQN
2341 YQDGFNNPKA NGDDLKKFNS QSDAFKQGQN DKNAIDSALN GKEDHSDSPA YKAAKAGLAG
2401 NESYDNNYQA AHDIGQAANQ GINDSLNGTP GKTQYVNEKD KTDAYNNAEH NFDMGLADKT
2461 DDKTSESSDA YKAGQAAKDG YKDAEANKGD FNKTSNVDNY NGNPFAKDSY DNAQAAYKAG
2521 LAGNDSNADA KKNSVANKAG LDAKQGIADA IKGQTDPTAV QSEDYNNAFN AAKAGNNVDN
2581 ANKSAADAKK DDQSTAYQAG QAAQKGIADV QTGTGSADQY KDNSAAQSAY SDAKQAYNDG
2641 LNGGDSKQAS KDNPTANAAG QAARQGMIDA QSGNGKNNPY TDNPQKDAYN KAKQAFDKGL
2701 NGNDDADNPV ANEAGKAARQ AAADAQVGKN DASPYNNNSN AHDAYQRAMN AYNDGFNSDK
2761 DNASATKAND IGKAARQGMN DAENGKDNSD SYNSNPDAKA AYDNAKKAYQ AGINGDTTSA
2821 DAKGNPAVNK AGYANFVPFS PKTENDNNNS PKPNAYQEAQ NAAKQKNSNE KAAAKDAVNA
2881 LINGKSKFTN SINLANKSPE YRKAFKKAYD QSKAGFDAGK KGHYSGSYDS SYQEGYKAGK
2941 KQFVKNTNDG KQAGKQAASK LTKLPSFKNK SQAYADAYKE AFKKEVKYNT PHYVYNLKKV
3001 YSHNNPSMTR KTRENKYAKT AMYKRETFKI TGYKINDKGQ LVYKTSKGWI SADKKSFNDV
3061 YYRHDNQNTN SARKSTQKIR VIKPQGTYIY NSKNFNKKTA VKNMRKGTTL EVKSVEQLGH
3121 ITRFYLGNGQ YISSNKTIVE KINKK
//