LOCUS       UQS84810.1               701 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae ATP-dependent Clp protease
            ATP-binding subunit protein.
ACCESSION   CP093362-1153
PROTEIN_ID  UQS84810.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /locus_tag="MOO46_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018365318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MARNPFDPFN DDFDKIFNQF LGDTGNSRSE RRYMVNGQEV TPEQLEQLRQ SGQLQNGQMN
       61 PQQKQNGGKS ILGKLGRNLT KEARDGKLDP VIGRDKEIQE AAEVLSRRSK NNPVLVGDAG
      121 VGKTAVVEGL AEAIAKGDVP ASIKNKEIIS IDISGLEAGT QYRGSFEENI QNLIKEVKAR
      181 KNVILFFDEI HQILGAGNAG DESGSKGLAD IIKPALSRGE FTVIGATTQD EYRNTIMKDA
      241 ALSRRFNEVK INAPSEKTTL EILKGIRPLY EEHHNVVLPD DVLKAAVDYS VQYIPQRSLP
      301 DKAIDLVDMT AAHLAAKHPV LDQKQLEDQI KTEKKAQEDA AAKEDYETAL KHKNEIDKLQ
      361 KQADSNKKDA EKVTANINDV ANAVERLTGV PVSKMSGNDI ERLKNMGKRL QGKVIGQDEA
      421 VNAVARAIRR NRAGFDEGNR PIGSFLFVGP TGVGKTELAK QLALDMFGNK ENIIRLDMSE
      481 YSDQTAVSKL IGASAGYVGY NDNNNTLTEK VRRNPYSIVL LDEIEKANPQ VLTLLLQVLD
      541 DGRLTDGQGN VVNFKNTVVI ATSNAGFGNE SITGDDDKDK KLMDRLAPYF RPEFLNRFNA
      601 IVEFSHLSKD NLKEIVNLLL SDVNKTLSKK DMDVKVSEPV KEHLIDEGYD EAMGARPLRR
      661 VVEQEIRDKI TDFYLDHADI KHLDADMKDD QVVISADKVA A
//