LOCUS UQS84780.1 1191 aa PRT BCT 19-SEP-2022 DEFINITION Apilactobacillus apisilvae PD-(D/E)XK nuclease family protein protein. ACCESSION CP093362-1121 PROTEIN_ID UQS84780.1 SOURCE Apilactobacillus apisilvae ORGANISM Apilactobacillus apisilvae Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Apilactobacillus. REFERENCE 1 (bases 1 to 1469670) AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S. and Jiranek,V. TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula carbonaria and Austroplebeia australis JOURNAL Int J Syst Evol Microbiol 72 (9) (2022) PUBMED 36094463 REFERENCE 2 (bases 1 to 1469670) AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and Jiranek,V. TITLE Direct Submission JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide, PMB 1, Glen Osmond, South Australia 5064, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: NOV-2020 Assembly Method :: Smrtlink v. 9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 11482x Sequencing Technology :: PacBio Sequel II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/14/2022 11:52:50 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,575 CDSs (total) :: 1,494 Genes (coding) :: 1,480 CDSs (with protein) :: 1,480 Genes (RNA) :: 81 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 63 ncRNAs :: 3 Pseudo Genes (total) :: 14 CDSs (without protein) :: 14 Pseudo Genes (ambiguous residues) :: 0 of 14 Pseudo Genes (frameshifted) :: 5 of 14 Pseudo Genes (incomplete) :: 11 of 14 Pseudo Genes (internal stop) :: 1 of 14 Pseudo Genes (multiple problems) :: 3 of 14 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Apilactobacillus apisilvae" /mol_type="genomic DNA" /strain="SG5_A10" /isolation_source="Bee" /host="Austroplebeia australis" /type_material="type strain of Apilactobacillus apisilvae" /db_xref="taxon:2923364" /country="Australia: Brisbane" /lat_lon="27.4810 S 153.0121 E" /collection_date="2020-04-30" protein /locus_tag="MOO46_05915" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003556214.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MTLQFILGTA SYDHEAVIID QLKQSIDDKP NDQYFYLVPN HIKFESEVQA LKKLNVDNKS 61 IYAESKFQTF SITRLVWYYM KNHPDYQRTR LSESGINMLI YQIILDHQDE LTVFRGESGQ 121 PGFIQKISQQ IAEMQAGQIT ADDLNNIYEN NGNLKSSLHD KMHDFTIIYR AFEQQTAGKY 181 LYKSDVLNLF CNYLMEGSLD LSNAHFYFNG FNQFTAQEGR LVEILIQQAK SVTISLNLDR 241 KYSNQLPENP NLFYQPAKLY QRFYNLAREN GIHILMDKMA KQQRVNNDLL KLDQYWQQST 301 KLGKIYAAQL DDNKSIQAFR ADNAFSEVEN IATKIRQMVA EQGYRYSDFL VMTRHLDHYQ 361 NVLKPIFDLE DIPSFNDVSR SMEDHPLVEL INSLFNIDPV NSKRSYQYAD VMRLLKTELL 421 IPKDENGEYI SIEDYRRAVA LTENLVLKNG YEGHRWLQED DWKYAWLSES DFGVKADRFS 481 DIEKQINLIR HFIKDNLPPF FKRIKHAKTG IQAAQVLYQF LVKMGVDDQL KIWRKTSIDD 541 GKLVEAAQPE QVWQTFCNLL DDFVSILGDR EFKLDDFLLL LQSGFEGANY SQIPSTLDQV 601 AISESGIVQM NNRKVVFMMG STDDVMPDKI TNEALFSDAD RDDLADNFSD GQYLRETSEK 661 QMANDPFLNY LAFLTGSDKL IFSYSLKEDT DSAVNVSPYV NRIVEHFNIP MVHLNSMPAA 721 SESNVQSFIG NKRSTLRHLV QASQNSKAVN AQLAPVWHYI YNQLCKDSDL AALTNKLLGG 781 LEYNNTPTKL TENIITGLYG DEIHTSISKL EQFYSNPYEY FLKYGLNLKE RDVFDLSPAS 841 TGQFYHEALD KLMRIVNEEH VDLSSLDKQA MDELVDTVTG KMLDDPNDMQ YTILQSSSRM 901 NYIKSQLIKT IKHTIETMQK QSQFTPMRPR KTEISFGQVG HKNDLKSLNF DIPASDEIST 961 PKLINVRGRI DRIDYMNVDG HDYLGIVDYK SSERKLDFGR VYDGTSMQMM TYIDVLAHNL 1021 GIFDEEDKAE LAGAVYMHIF NPKYSKSDLR KTFADAMLSK QKYQGILVDN GDLLNKIDKN 1081 IADDKYGTSK VFPIQKKKDG SYYKSSPIVQ PEDLDLLLKH NEDLITNAGK KIFSGNIDMK 1141 PARFDQNQDA MQYTPYRSIM QFDPLLKENN YRDVENYNLN SILKKLRGDN Q //