LOCUS       UQS84780.1              1191 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae PD-(D/E)XK nuclease family
            protein protein.
ACCESSION   CP093362-1121
PROTEIN_ID  UQS84780.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /locus_tag="MOO46_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003556214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
BEGIN
        1 MTLQFILGTA SYDHEAVIID QLKQSIDDKP NDQYFYLVPN HIKFESEVQA LKKLNVDNKS
       61 IYAESKFQTF SITRLVWYYM KNHPDYQRTR LSESGINMLI YQIILDHQDE LTVFRGESGQ
      121 PGFIQKISQQ IAEMQAGQIT ADDLNNIYEN NGNLKSSLHD KMHDFTIIYR AFEQQTAGKY
      181 LYKSDVLNLF CNYLMEGSLD LSNAHFYFNG FNQFTAQEGR LVEILIQQAK SVTISLNLDR
      241 KYSNQLPENP NLFYQPAKLY QRFYNLAREN GIHILMDKMA KQQRVNNDLL KLDQYWQQST
      301 KLGKIYAAQL DDNKSIQAFR ADNAFSEVEN IATKIRQMVA EQGYRYSDFL VMTRHLDHYQ
      361 NVLKPIFDLE DIPSFNDVSR SMEDHPLVEL INSLFNIDPV NSKRSYQYAD VMRLLKTELL
      421 IPKDENGEYI SIEDYRRAVA LTENLVLKNG YEGHRWLQED DWKYAWLSES DFGVKADRFS
      481 DIEKQINLIR HFIKDNLPPF FKRIKHAKTG IQAAQVLYQF LVKMGVDDQL KIWRKTSIDD
      541 GKLVEAAQPE QVWQTFCNLL DDFVSILGDR EFKLDDFLLL LQSGFEGANY SQIPSTLDQV
      601 AISESGIVQM NNRKVVFMMG STDDVMPDKI TNEALFSDAD RDDLADNFSD GQYLRETSEK
      661 QMANDPFLNY LAFLTGSDKL IFSYSLKEDT DSAVNVSPYV NRIVEHFNIP MVHLNSMPAA
      721 SESNVQSFIG NKRSTLRHLV QASQNSKAVN AQLAPVWHYI YNQLCKDSDL AALTNKLLGG
      781 LEYNNTPTKL TENIITGLYG DEIHTSISKL EQFYSNPYEY FLKYGLNLKE RDVFDLSPAS
      841 TGQFYHEALD KLMRIVNEEH VDLSSLDKQA MDELVDTVTG KMLDDPNDMQ YTILQSSSRM
      901 NYIKSQLIKT IKHTIETMQK QSQFTPMRPR KTEISFGQVG HKNDLKSLNF DIPASDEIST
      961 PKLINVRGRI DRIDYMNVDG HDYLGIVDYK SSERKLDFGR VYDGTSMQMM TYIDVLAHNL
     1021 GIFDEEDKAE LAGAVYMHIF NPKYSKSDLR KTFADAMLSK QKYQGILVDN GDLLNKIDKN
     1081 IADDKYGTSK VFPIQKKKDG SYYKSSPIVQ PEDLDLLLKH NEDLITNAGK KIFSGNIDMK
     1141 PARFDQNQDA MQYTPYRSIM QFDPLLKENN YRDVENYNLN SILKKLRGDN Q
//