LOCUS UQS84744.1 540 aa PRT BCT 19-SEP-2022
DEFINITION Apilactobacillus apisilvae peptide ABC transporter substrate-
binding protein protein.
ACCESSION CP093362-1082
PROTEIN_ID UQS84744.1
SOURCE Apilactobacillus apisilvae
ORGANISM Apilactobacillus apisilvae
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Apilactobacillus.
REFERENCE 1 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1469670)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 11482x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:52:50
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,575
CDSs (total) :: 1,494
Genes (coding) :: 1,480
CDSs (with protein) :: 1,480
Genes (RNA) :: 81
rRNAs :: 5, 5, 5 (5S, 16S, 23S)
complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)
tRNAs :: 63
ncRNAs :: 3
Pseudo Genes (total) :: 14
CDSs (without protein) :: 14
Pseudo Genes (ambiguous residues) :: 0 of 14
Pseudo Genes (frameshifted) :: 5 of 14
Pseudo Genes (incomplete) :: 11 of 14
Pseudo Genes (internal stop) :: 1 of 14
Pseudo Genes (multiple problems) :: 3 of 14
CRISPR Arrays :: 1
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Apilactobacillus apisilvae"
/mol_type="genomic DNA"
/strain="SG5_A10"
/isolation_source="Bee"
/host="Austroplebeia australis"
/type_material="type strain of Apilactobacillus apisilvae"
/db_xref="taxon:2923364"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-04-30"
protein /locus_tag="MOO46_05720"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_004466717.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKKAKLSVLA LTAMSALGLA ACGNQNNSSA PKNEVNMSEP TNLLTLDQSK LVDQVSDVTL
61 NNSNQGLLVM TKDSKVVPGV AKSYHVSKDG KTYTFNLRHS KWSNGTAVTA KDFVYGFQRS
121 VNPKTAAAYQ YLFDNVHNAG AVSKGKMPVS SLGVKAEGDY KFVVNLDKPQ TYFKYVATMP
181 PTYPQSQAEV NKYGQGYATN SDKQLYNGAF QVKGWNGTND NWQLVKNPYY WDKNNTKLSK
241 MNFSVAKDSQ TALDQYQSGK LDEMQLSGKS QVSSFKGNSE YHARKEAGTF YLEMNQKKVP
301 ALKNVNVRKA LSLAINRNEL TNNVLGNGSV PAKGFVASDM AKYQGKDFTD DGYVSSAVQN
361 NLKEAKQLFA KGMKQVGQDK LTLSILSDDT SDSKTMTEFL QSELQKLPGL TINDVNVPAK
421 VATSRTEKGD FDVTVGAWIA DFPDPVSFMS LMTTNNGYNH GGWSNSQYDS LMQKATTADA
481 NNYGKRWNDM VKAQKVMLND QAVVPLYQLV SPQVLKNRVQ GVNYYPSGGN YDFRYVHTNN
//