LOCUS       UQS84693.1               648 aa    PRT              BCT 19-SEP-2022
DEFINITION  Apilactobacillus apisilvae DNA topoisomerase (ATP-hydrolyzing)
            subunit B protein.
ACCESSION   CP093362-1027
PROTEIN_ID  UQS84693.1
SOURCE      Apilactobacillus apisilvae
  ORGANISM  Apilactobacillus apisilvae
            Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
            Apilactobacillus.
REFERENCE   1  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
            and Jiranek,V.
  TITLE     Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
            sp. nov., Bombilactobacillus folatiphilus sp. nov. and
            Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
            bacterial isolates from stingless bees Tetragonula carbonaria and
            Austroplebeia australis
  JOURNAL   Int J Syst Evol Microbiol 72 (9) (2022)
   PUBMED   36094463
REFERENCE   2  (bases 1 to 1469670)
  AUTHORS   Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
            Jiranek,V.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
            PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: NOV-2020
            Assembly Method        :: Smrtlink v. 9.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 11482x
            Sequencing Technology  :: PacBio Sequel II
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/14/2022 11:52:50
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.0
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 1,575
            CDSs (total)                      :: 1,494
            Genes (coding)                    :: 1,480
            CDSs (with protein)               :: 1,480
            Genes (RNA)                       :: 81
            rRNAs                             :: 5, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 63
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 14
            CDSs (without protein)            :: 14
            Pseudo Genes (ambiguous residues) :: 0 of 14
            Pseudo Genes (frameshifted)       :: 5 of 14
            Pseudo Genes (incomplete)         :: 11 of 14
            Pseudo Genes (internal stop)      :: 1 of 14
            Pseudo Genes (multiple problems)  :: 3 of 14
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Apilactobacillus apisilvae"
                     /mol_type="genomic DNA"
                     /strain="SG5_A10"
                     /isolation_source="Bee"
                     /host="Austroplebeia australis"
                     /type_material="type strain of Apilactobacillus apisilvae"
                     /db_xref="taxon:2923364"
                     /country="Australia: Brisbane"
                     /lat_lon="27.4810 S 153.0121 E"
                     /collection_date="2020-04-30"
     protein         /gene="gyrB"
                     /locus_tag="MOO46_05445"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010581281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_component:
                     GO:0009330 - DNA topoisomerase type II (double strand cut,
                     ATP-hydrolyzing) complex [Evidence IEA]; GO_function:
                     GO:0003918 - DNA topoisomerase type II (double strand cut,
                     ATP-hydrolyzing) activity [Evidence IEA]; GO_process:
                     GO:0006265 - DNA topological change [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MTDKEKEEQR IKTDEYNASQ IQVLEGLEAV RKRPGMYIGS TSVQGLHHLV WEIIDNGIDE
       61 ALAGFADSIH VTIEKDNSIT VVDDGRGIPV DIQKKTGKPA LETVFTILHA GGKFGGGGYK
      121 VSGGLHGVGA SVVNALSTEL DVTVTRDGKK YYMDFSRGHV KTPMKFIGND DPDNHGTKVH
      181 FTPDPDIFTE TTTYNVKTLT ARIRELAFLN KGLKISLRDN RPAEPTEEDF LYEGGIKHYV
      241 EFIDSDKEPI FPEPIYVEGK ENGISVEVAL QYTDDYHSEL RTFTNNIHTI EGGTHEEGFK
      301 RALTRAVNDY ARKNNLLKEK DANLTGPDVR EGLTAVISVK HPDPQFEGQT KTKLGNSDAR
      361 TATDHIFAEH FSKFLMENPK LGKQIVDKGS LASRVRAAAK RAREVTRKKS GLEISSLPGK
      421 LANNTSKDPE ISELFIVEGD SAGGSAKQGR SRLTQAILPI RGKILNVQKA TMDKILANEE
      481 IRSMFTAMGT GFGNDFDINK VKYHKLIIMT DADVDGAHIQ ALLLTLIYNY MRPLLDAGYV
      541 YIAQPPLYRL QQGKMIRYVA NDEELDRWKA ELPASPKPSI SRYKGLGEMD AEQLWDTTMN
      601 PDNRRLQRVE EKEAENAADV FNMLMGNKVE PRRKFIEENA TFVENLDV
//