LOCUS UQS82868.1 436 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus diaminopimelate decarboxylase
protein.
ACCESSION CP093366-438
PROTEIN_ID UQS82868.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /gene="lysA"
/locus_tag="MOO45_02390"
/EC_number="4.1.1.20"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_007125434.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0008836 - diaminopimelate decarboxylase activity
[Evidence IEA]; GO_process: GO:0009089 - lysine
biosynthetic process via diaminopimelate [Evidence IEA]"
/transl_table=11
BEGIN
1 MKINVNEQGH LTIGGCDALE LAQNYETPLV VYDVAQIRQQ LRSYQEAFKQ QQISAVVSYA
61 SKAFCAKAIY QVVQQEGAHV DVVSAGELAT ALAAGFDPQN ISYHGNNKSL AELDFAIAQQ
121 VGVLVVDNFY ELTLLQSLLH YKYPRQTIQV MLRITPGISA HTHEYDQTGQ IDSKFGFDVN
181 SGQAEKALQQ VLQNPQLDLI GIHAHIGSQI MAVAGFELLV AKLCQLAHAW QQKYHFETKI
241 LNLGGGFGIR YTDSDEPLTA QQFVEAIVQT LRKEWVNSDS ELPQVWIEPG RAIVGNAGVS
301 LYTIGSKKTI PHVRTFLTVD GGMGDNIRPA LYQAQYEAVL ARAPLAAAEQ TVTVAGRYCE
361 SGDVLISQQA LPATQPGDIL AVLATGAYGY SMASNYNRIG RPAVVFAEEG QGQIVVAREE
421 IVDLMHLDQD YVKENE
//