LOCUS UQS82701.1 723 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus penicillin-binding protein protein.
ACCESSION CP093366-635
PROTEIN_ID UQS82701.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /locus_tag="MOO45_03400"
/inference="COORDINATES: protein motif:HMM:NF013100.2"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MSNHKAEDKR IINKARRDRR IIGRFFLIII ALFFIICIFR FTYITISGHV GSVDLSKRTE
61 QKYRHKKTLS ALRGSIFAND GTKIAYSDQS YELYAVIDPT YHSTVGKPLY VHDKKKTAQT
121 LSRYIPMNAK EIYEILNPKE KTTFQVEFGT AGQNISFGMK KAIQKKHLQG IYFQAVPNRS
181 YPNGNFASNT IGLAQISEST TKKKKSSQGV MGLESYYNKV LEGKNGYEIN YTDPEGYTLP
241 KTHKKTKLPV QGSNVYTTLD LNYQHYLEQL LDDVYTKYHP QSMQAIVTTP KNGHIIAISQ
301 RPTFNPDTKE NIMNSWQDLN LQDTYEPGSV FKVLTLAASI NSGNYNPNQY YHSGAITIGD
361 RTIHDWNTNG WGEIPFNQAF PRSSNVGMVN LEQQMGASTW LKYMKKFKIG KLTNITLPGE
421 VAGSINFQHA SDQAITSFGQ SVSVTALQMV QALGAIGNHG KLMQPQLVSQ IENPNTGKIK
481 KIMPKEVGQP VSDKTTQQVL DAMRDVVRKD YGTGSMYKIP GQDVAVKTGT AQISSSKGGY
541 LTGSNDYVYS VAGLAPASNP KYLVYITMKK PQVMTKAPEQ MLAEIFNPMM QRLLGTGKIE
601 NVETSDTSIS MPELTNQSLA SVRQTLNKQH LTAGVVGTGS KVVQQLPSAK TPVVQNQRVI
661 LLTDGAMTMP DVRGWSKNDL LKLAEITGKK IVLKGHGYAY KQSVAPQSVL NNVKEVVVSL
721 KQN
//