LOCUS UQS82460.1 783 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus endonuclease MutS2 protein.
ACCESSION CP093366-371
PROTEIN_ID UQS82460.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /locus_tag="MOO45_01895"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_011374102.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0030983 - mismatched DNA binding [Evidence IEA];
GO_process: GO:0006259 - DNA metabolic process [Evidence
IEA]"
/transl_table=11
BEGIN
1 MNQRILQTLE YDKVRQSLTE FLITDPGLDQ LKQLQPQTQI AQVKHLLAQT ADAVELCRLA
61 QELPIEPLQR IDNELKRLQI DALLNGSELY RISMVLRVTN NIKTAFEQLR LDGVDLQELY
121 DYGAQLVALP NLNLTLQQSV DSQGKLLDTA DPQLKRVRRS ILQSQQQVHE QMDHYLQGKQ
181 NKYLSEKLIT VRDGRLVLPV KQESRNHFGG VIHDQSASGQ TVYVEPQTVI ALNNKIQEQQ
241 AREKQIIHQI LQKLSDTLRP YVQELAQNTQ IIGQLDLIQA KAQYAARLQA VEPTVNANYV
301 IDLKQARHPL IDPAKVVANT IILGKDYRNI IITGPNTGGK TITLKTTGLL QLMAQSGLFI
361 PAQADSQVTV LTEIFADIGD EQSIEQNLST FSSHMDNIIQ MLPHLSESSL VLLDELGAGT
421 DPKQGAALAM ALIEAMSCSR CLMLVTTHYP ELKLFAYDYP QTTNASMEFD EQTLQPTYRL
481 LIGVPGSSNA FDIAQHLGMD AQIVQQARQI QSDDEQDLNK MIQDLERQRK EFEQKTTQYQ
541 TQLAQVQQQQ EALAAQQQTL TQQQNQILQQ AQTKANQLVA QAQERSEKII ADLHHLQQQA
601 PDLIKEDQII SARTNLKKLH HDEVLKKNKV LQRQKRKQQL KIGDDVHVDE YGQDGVIVGQ
661 DKKGNFEVQL GIIKMKLASD QITKVKNQPE QQSHFTQKRS HSRVPLKLDL RGERYEEAMG
721 DLEQYLDAAL VAGYGQVTIV HGFGTGAIRK GVQKALRQNP RVKSFEYAPA SSGGQGATIV
781 KFG
//