LOCUS UQS82447.1 624 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus DNA mismatch repair endonuclease
MutL protein.
ACCESSION CP093366-356
PROTEIN_ID UQS82447.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /gene="mutL"
/locus_tag="MOO45_01820"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_010018734.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_component:
GO:0032300 - mismatch repair complex [Evidence IEA];
GO_function: GO:0005524 - ATP binding [Evidence IEA];
GO_function: GO:0016887 - ATP hydrolysis activity
[Evidence IEA]; GO_function: GO:0030983 - mismatched DNA
binding [Evidence IEA]; GO_process: GO:0006298 - mismatch
repair [Evidence IEA]"
/transl_table=11
BEGIN
1 MAQIQKLTPT LSNQIAAGEV IERPASVVKE LVENALDANA SQIDIQIKDA GVTQITVADN
61 GTGIASDQVE LAFLPHATSK INSTQDLFNV KTLGFRGEAL ASIAAVAKVR IITSIDAKSG
121 TQLEIIGGEF QAPMTVAATK GTIITVEDLF YNTPVRLKYI KTLNTELKQV VDIVNRLALG
181 HAKVAFTLTN EKKTLIRTSG NGDVQQAMAG IYGRKTAADL VACQAQDADF TIKGYTSLPK
241 QTRANRNYLS LLVNGRYINN YQLSQAWLAG YGSKLMVGRY PLGVLQITAA PLLVDVNVHP
301 TKREVRLSKE QQLAALVEQA VSQALESLNL IPDVPVDLTH KKQPVLTPLT LHQIAEPAGP
361 PQVTEQSLIA PDALHWTSIF DDPKHLKEWD ERLQQATPVC PSSPQVPDFA AQLETNAGQP
421 TFPQLQFLAQ IHETYLVAQS SDGFYLVDQH AAQERVKYEQ YRVQMGQVSA YQQKLLVPLI
481 LDYSNADTVT LSDHLDLLKQ VGVEIAPFGQ NSFVVTAHPA WIPADQEEAT IREMIDYILQ
541 DGKIDIAKFR EQTAITMSCK LSIKANHHLD QSQAQAILDQ LAQTKNPYNC SHGRPTLIHF
601 SDQDVQKMFK RIQDPHQSRW KKRG
//