LOCUS UQS82302.1 669 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus methionine--tRNA ligase protein.
ACCESSION CP093366-200
PROTEIN_ID UQS82302.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /gene="metG"
/locus_tag="MOO45_01000"
/EC_number="6.1.1.10"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_003699671.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology. GO_function:
GO:0000049 - tRNA binding [Evidence IEA]; GO_function:
GO:0004825 - methionine-tRNA ligase activity [Evidence
IEA]; GO_function: GO:0005524 - ATP binding [Evidence
IEA]; GO_process: GO:0006431 - methionyl-tRNA
aminoacylation [Evidence IEA]"
/transl_table=11
BEGIN
1 MSKKPTFYIT TPIYYPSGKL TIGNSYTTVA ADTLARYKRS RGFDVFFLTG TDEHGLKIEE
61 KAEANGMDPQ SYVDKMAAGI KELWQLLEIS NDKFIRTTDQ EHVDAVQKIV QKLIDSGDVY
121 LGEYLGWYSV EDEEYFTESQ LAEVYRDDQG QVIGGKAPSG HEVKLVKEPS YFFKMSKYAD
181 RLLQYYEDHP DFIQPESRKN EMINNFIKPG LEDLAMSRTS FNWGVPIPSD PKHVVYVWVD
241 ALLNYITALG YGSDNQALFD RYWPANVHFV GKEIVRFHTI YWPIILMALG LPLPKQIFGH
301 GWLLMKDGKM SKSKGNVVYP EMLVERYGLD PLRYYLMRAI PFGSDGVFTP EDFVQRINYD
361 LANDLGNLLN RTVSMINKYF DGQIPALVLG QTAVDQDLEN CAAQTIADYN QAMDQFEFST
421 ALDDTWKFIS RTNKYIDQTQ PWMLAKDPDK NEELGNVMAH LAEALRIIAI LISPVMTHAP
481 QKIFEQLGFT AEQFQPISYG HLPQPKVVAQ PTPIFPRLDY DEEVAYIKDK MRQEQQKAQA
541 NGTLKVTKSA AAKQKQISQK AEINIDDFDK VQIQVVEILA VQKVPKADRL LQFKLDDGSG
601 QERQIISGIA EFYPNPQELV HQKVLAITNL KPRKMRGVIS SGMLLSAEHN GQVQLVTVPQ
661 ELVNGSGVE
//