LOCUS UQS82161.1 787 aa PRT BCT 19-SEP-2022
DEFINITION Bombilactobacillus folatiphilus hypothetical protein protein.
ACCESSION CP093366-44
PROTEIN_ID UQS82161.1
SOURCE Bombilactobacillus folatiphilus
ORGANISM Bombilactobacillus folatiphilus
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae;
Bombilactobacillus.
REFERENCE 1 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S.
and Jiranek,V.
TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov.
sp. nov., Bombilactobacillus folatiphilus sp. nov. and
Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid
bacterial isolates from stingless bees Tetragonula carbonaria and
Austroplebeia australis
JOURNAL Int J Syst Evol Microbiol 72 (9) (2022)
PUBMED 36094463
REFERENCE 2 (bases 1 to 1622785)
AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and
Jiranek,V.
TITLE Direct Submission
JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide,
PMB 1, Glen Osmond, South Australia 5064, Australia
COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: NOV-2020
Assembly Method :: Smrtlink v. 9.0
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7404x
Sequencing Technology :: PacBio Sequel II
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 03/14/2022 11:45:56
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 6.0
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 1,623
CDSs (total) :: 1,550
Genes (coding) :: 1,527
CDSs (with protein) :: 1,527
Genes (RNA) :: 73
rRNAs :: 4, 4, 4 (5S, 16S, 23S)
complete rRNAs :: 4, 4, 4 (5S, 16S, 23S)
tRNAs :: 58
ncRNAs :: 3
Pseudo Genes (total) :: 23
CDSs (without protein) :: 23
Pseudo Genes (ambiguous residues) :: 0 of 23
Pseudo Genes (frameshifted) :: 12 of 23
Pseudo Genes (incomplete) :: 9 of 23
Pseudo Genes (internal stop) :: 10 of 23
Pseudo Genes (multiple problems) :: 7 of 23
CRISPR Arrays :: 3
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Bombilactobacillus folatiphilus"
/mol_type="genomic DNA"
/strain="SG4_D2"
/isolation_source="Bee"
/host="Tetragonula carbonaria"
/type_material="type strain of Bombilactobacillus
folatiphilus"
/db_xref="taxon:2923362"
/country="Australia: Brisbane"
/lat_lon="27.4810 S 153.0121 E"
/collection_date="2020-03-20"
protein /locus_tag="MOO45_00220"
/inference="COORDINATES: ab initio
prediction:GeneMarkS-2+"
/note="Derived by automated computational analysis using
gene prediction method: GeneMarkS-2+."
/transl_table=11
BEGIN
1 MFFLVSIHNV QAKVSTKTAP PEITPNLIDD GFNSPEYTQE DQTVSRDDDY GCLIASLLLE
61 NNFTCDFYTQ GETSAFYPYI AGHEKYLELH DTLNSFSFRD YYSVCPINDS GGVLRNDDVL
121 YEPDVVYVSS TDHVNRGKFY LVTDQTGQVK ALKWLIYSTK VDRVKDNVPN GAFLFEDLIT
181 PSKTATAGVN HQLFVKNVSQ STLSYIVADY SEIGSSRAGT YQSTSAIALG NNQGFTSLLG
241 NGTTLATFRT GVADGPNRWL TIGLYSSPNN KWQGTDYSNY VGQEAGNYPE GTNLTLTSGQ
301 VLTGLESLWP VQKIAPQETQ HHNIEFDLEH RGQAKPELTS SYSNTKSSRF NHPGDQLNLT
361 VQLANKSDGQ GSLTPKTFYV TLPQGLSMTA EDLKQITLSS TGSHAVLTGS YDATTRQVKM
421 VVPTVYNSSI VLDNASDRDW VKFPVTIDSD APIGNAVVKT SFSGDNKDGG GNHQTVTAAA
481 PDLTIPITKA FDAKLTLGVK NTKDTSDYAS SATYVPGDTL QYHMQYQLNE ANMYNLTSPV
541 TFSSRNAGLD FSNSAPSVTV NGDRSAASAT VDPNTGKITV TKATGNFSPG DLIDLTYNAK
601 AKADPVAGEP RAKHESTIKI PYNTVGINVT MNGQTLSNTS ASTSLQRKDL DYFVRVPDVI
661 DFGRNPRVFD SPFYNTTSGR LKFSHYSASS SKQYYLQVKY NQDLRTSAYA YLRPDSGNAL
721 IEYRTDSSGT YQSIDGTASN LTTSGLTTQG ISDLTSYVSD KHFRLNSNDK PLGNYSGTMT
781 WTYSNSI
//