LOCUS UQS81515.1 375 aa PRT BCT 19-SEP-2022 DEFINITION Bombilactobacillus folatiphilus RNA polymerase sigma factor RpoD protein. ACCESSION CP093366-881 PROTEIN_ID UQS81515.1 SOURCE Bombilactobacillus folatiphilus ORGANISM Bombilactobacillus folatiphilus Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Bombilactobacillus. REFERENCE 1 (bases 1 to 1622785) AUTHORS Oliphant,S.A., Watson-Haigh,N.S., Sumby,K.M., Gardner,J., Groom,S. and Jiranek,V. TITLE Apilactobacillus apisilvae sp. nov., Nicolia spurrieriana gen. nov. sp. nov., Bombilactobacillus folatiphilus sp. nov. and Bombilactobacillus thymidiniphilus sp. nov., four new lactic acid bacterial isolates from stingless bees Tetragonula carbonaria and Austroplebeia australis JOURNAL Int J Syst Evol Microbiol 72 (9) (2022) PUBMED 36094463 REFERENCE 2 (bases 1 to 1622785) AUTHORS Oliphant,S.A., Sumby,K.M., Gardner,J.M., Watson-Haigh,N.S. and Jiranek,V. TITLE Direct Submission JOURNAL Submitted (11-MAR-2022) Wine Science, The University of Adelaide, PMB 1, Glen Osmond, South Australia 5064, Australia COMMENT The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: NOV-2020 Assembly Method :: Smrtlink v. 9.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 7404x Sequencing Technology :: PacBio Sequel II ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/14/2022 11:45:56 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.0 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 1,623 CDSs (total) :: 1,550 Genes (coding) :: 1,527 CDSs (with protein) :: 1,527 Genes (RNA) :: 73 rRNAs :: 4, 4, 4 (5S, 16S, 23S) complete rRNAs :: 4, 4, 4 (5S, 16S, 23S) tRNAs :: 58 ncRNAs :: 3 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 12 of 23 Pseudo Genes (incomplete) :: 9 of 23 Pseudo Genes (internal stop) :: 10 of 23 Pseudo Genes (multiple problems) :: 7 of 23 CRISPR Arrays :: 3 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Bombilactobacillus folatiphilus" /mol_type="genomic DNA" /strain="SG4_D2" /isolation_source="Bee" /host="Tetragonula carbonaria" /type_material="type strain of Bombilactobacillus folatiphilus" /db_xref="taxon:2923362" /country="Australia: Brisbane" /lat_lon="27.4810 S 153.0121 E" /collection_date="2020-03-20" protein /gene="rpoD" /locus_tag="MOO45_04635" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_003647189.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology. GO_function: GO:0003677 - DNA binding [Evidence IEA]; GO_function: GO:0016987 - sigma factor activity [Evidence IEA]; GO_process: GO:0006355 - regulation of transcription, DNA-templated [Evidence IEA]" /transl_table=11 BEGIN 1 MAEDKKKKSV IKSSKELERA TNELVKSYKK IGKISEQDLT EQLLKPFALK GESIVELIDH 61 LSEKGVSVVD AKGEPSQLAL KNQKEVSKHE LKDMSAPTGV KINDPVRMYL KEIGRVPLLN 121 AQEEVALAQR IEDGDEEAKQ QLAEANLRLV VSIAKRYVGR GMHFLDLIQE GNMGLMKAVE 181 KFDYRKGFKF STYATWWIRQ AITRAIADQA RTIRIPVHMV ETINKLIRIQ RQLLQDLGRE 241 PTPEEIGAEM DILTPKVREI LKIAQEPVSL ETPIGEEDDS HLGDFIEDNG ATSPEDHASY 301 ELLKEQLEDV LDTLTDREEN VLRLRFGLDD GQTRTLEEVG KVFGVTRERI RQIEAKALRK 361 LRHPSRSNQL KDFLD //