LOCUS UOE45722.1 1227 aa PRT BCT 04-APR-2022 DEFINITION Agromyces larvae transcription-repair coupling factor protein. ACCESSION CP094528-1618 PROTEIN_ID UOE45722.1 SOURCE Agromyces larvae ORGANISM Agromyces larvae Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Agromyces. REFERENCE 1 (bases 1 to 4005264) AUTHORS Won,M., Kim,S.-J. and Kwon,S.-W. TITLE Mucilaginibacter sp. isolated from the gut of Protaetia brevitarsis seulensis larvae JOURNAL Unpublished REFERENCE 2 (bases 1 to 4005264) AUTHORS Won,M., Kim,S.-J. and Kwon,S.-W. TITLE Direct Submission JOURNAL Submitted (28-MAR-2022) Agricultural Microbiology Division, National Institute of Agricultural Sciences, 166, Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365, South Korea COMMENT Bacteria and source DNA available from Korean Agricultural Culture Collection (KACC). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: DEC-2021 Assembly Method :: NextDenovo v. 2.5.0 Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 149.1x Sequencing Technology :: Pilon ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 03/29/2022 13:53:43 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.1 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,804 CDSs (total) :: 3,747 Genes (coding) :: 3,705 CDSs (with protein) :: 3,705 Genes (RNA) :: 57 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 48 ncRNAs :: 3 Pseudo Genes (total) :: 42 CDSs (without protein) :: 42 Pseudo Genes (ambiguous residues) :: 0 of 42 Pseudo Genes (frameshifted) :: 14 of 42 Pseudo Genes (incomplete) :: 35 of 42 Pseudo Genes (internal stop) :: 4 of 42 Pseudo Genes (multiple problems) :: 8 of 42 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Agromyces larvae" /mol_type="genomic DNA" /strain="CFWR-12" /isolation_source="Gut of Protaetia brevitarsis seulensis larvae" /type_material="type strain of Agromyces larvae" /db_xref="taxon:2929802" /geo_loc_name="South Korea: Jeollabuk-do, Wanju_Gun, Iseo-myeon" /collection_date="2016" /collected_by="Kim Soo-Jin, Soon-Wo Kwon, Miyoung Won" protein /gene="mfd" /locus_tag="MTO99_08250" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_012299731.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology. GO_function: GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO_function: GO:0005515 - protein binding [Evidence IEA]; GO_function: GO:0005524 - ATP binding [Evidence IEA]; GO_function: GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO_process: GO:0006281 - DNA repair [Evidence IEA]" /transl_table=11 BEGIN 1 MNLQGLNTAL SRASTIDAAL DQAQRNADFS APSGLDAPLL AGLLGRRADA GLPPVLFAIT 61 ATSREGEALR ASLAPYLPDD AELLEFPAWE TLPHERLSPS AETVGRRLHA LRRLHERAEQ 121 VAAGDAASRH PLVVVASVRA ALQPIAENLA SLEPIELVAG ARGHDLAAIS ARLVDLAYAR 181 VDLVSRRGEF AVRGGILDVF PPTADHPVRV EFFGDEVEEL RAFSVADQRS LPEPIERVRL 241 APSRELLLTP AVRQRAREMV HEFPTLSGML EKLAEGIPVE GMESLAPALI DRLVPVTQYL 301 PEGAAVAVLA PERVEGRAIS LGETNREFLA AAWSAATMGA GAPIDLAAGD FLSVADLREA 361 ALFSAPGEPD PQRAWWTLSS FDAGEAAEDA AGPDASYVRV AANAMPSFQG NVEGAVEHVG 421 GRLRDGWSLV VAAAGHGLVE RARDVLADSG LAARIVDEVP GDLEAGVAYL VQADAARGFE 481 VPEAKIGLVA EAEFYGRAAG YDARQGKKLA TRRRNVVDPL QLKPGDYVVH STHGIGRFVE 541 LVQREVATGA RPTGPTRTGI KQQPKAVREY LVLEYAPSKR GQAGDRLYVP MDQLDLLSRY 601 VGGESPSLSK MGGSDWSQAK SRARKAVRDI AVELVKLYSA RMASKGHAFG PDTPWQHELE 661 EAFPYVETLD QLQTIDEVKA DMERPIPMDR LLAGDVGFGK TEVAVRAAFK AIQDGKQVAM 721 LVPTTLLVKQ HFETFSERFA GFPVHVRALS RFQTDKEARE TIAGLADGTV DLVIGTHRIL 781 TEKLRFKDLG LLIIDEEQRF GVEHKDQLKK LKTNVDILAM SATPIPRTLE MAVTGIREMS 841 TLATPPEDRH PILTYVGPYT DQQVAAAIRR EMLREGQVFF VHNRVSSINR VAAQLAELVP 901 EARIAVAHGQ LNEHVLDQIV NDFWERKFDV LVSTTIIETG LDISNANTII IDRADKYGLS 961 QLHQLRGRVG RGRERAYAYF LYDPNKPLSE TAHDRLSTIA ANNELGGGMQ IALKDLEIRG 1021 AGNLLGAEQA GHIAGVGFDL YLRMIGEAVS AFRGDVAEGQ TELRLELPVD AHIPDDYVDS 1081 ERLRLEAYQK LSAASGPAAK DGQIDQVLEE IVDRYGEPPE AVQHLVAVSR LRRQAQLAGL 1141 SDVIATGTKL RLAPAKLPDS RRVRLERMYP GAKVFAQNDV ILVPFPTPGG EAPGDGDLIA 1201 WVSRLIEVIF PAPEPATEEA GAAAAAS //