LOCUS       UOE45722.1              1227 aa    PRT              BCT 04-APR-2022
DEFINITION  Agromyces larvae transcription-repair coupling factor protein.
ACCESSION   CP094528-1618
PROTEIN_ID  UOE45722.1
SOURCE      Agromyces larvae
  ORGANISM  Agromyces larvae
            Bacteria; Actinomycetota; Actinomycetes; Micrococcales;
            Microbacteriaceae; Agromyces.
REFERENCE   1  (bases 1 to 4005264)
  AUTHORS   Won,M., Kim,S.-J. and Kwon,S.-W.
  TITLE     Mucilaginibacter sp. isolated from the gut of Protaetia brevitarsis
            seulensis larvae
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4005264)
  AUTHORS   Won,M., Kim,S.-J. and Kwon,S.-W.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAR-2022) Agricultural Microbiology Division,
            National Institute of Agricultural Sciences, 166,
            Nongsaengmyeong-ro, Iseo-myeon, Wanju-gun, Jeollabuk-do 55365,
            South Korea
COMMENT     Bacteria and source DNA available from Korean Agricultural Culture
            Collection (KACC).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: DEC-2021
            Assembly Method        :: NextDenovo v. 2.5.0
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 149.1x
            Sequencing Technology  :: Pilon
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 03/29/2022 13:53:43
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.1
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,804
            CDSs (total)                      :: 3,747
            Genes (coding)                    :: 3,705
            CDSs (with protein)               :: 3,705
            Genes (RNA)                       :: 57
            rRNAs                             :: 2, 2, 2 (5S, 16S, 23S)
            complete rRNAs                    :: 2, 2, 2 (5S, 16S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 42
            CDSs (without protein)            :: 42
            Pseudo Genes (ambiguous residues) :: 0 of 42
            Pseudo Genes (frameshifted)       :: 14 of 42
            Pseudo Genes (incomplete)         :: 35 of 42
            Pseudo Genes (internal stop)      :: 4 of 42
            Pseudo Genes (multiple problems)  :: 8 of 42
            ##Genome-Annotation-Data-END##
FEATURES             Qualifiers
     source          /organism="Agromyces larvae"
                     /mol_type="genomic DNA"
                     /strain="CFWR-12"
                     /isolation_source="Gut of Protaetia brevitarsis seulensis
                     larvae"
                     /type_material="type strain of Agromyces larvae"
                     /db_xref="taxon:2929802"
                     /geo_loc_name="South Korea: Jeollabuk-do, Wanju_Gun,
                     Iseo-myeon"
                     /collection_date="2016"
                     /collected_by="Kim Soo-Jin, Soon-Wo Kwon, Miyoung Won"
     protein         /gene="mfd"
                     /locus_tag="MTO99_08250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012299731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology. GO_function:
                     GO:0003690 - double-stranded DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]; GO_process: GO:0006281 - DNA repair
                     [Evidence IEA]"
                     /transl_table=11
BEGIN
        1 MNLQGLNTAL SRASTIDAAL DQAQRNADFS APSGLDAPLL AGLLGRRADA GLPPVLFAIT
       61 ATSREGEALR ASLAPYLPDD AELLEFPAWE TLPHERLSPS AETVGRRLHA LRRLHERAEQ
      121 VAAGDAASRH PLVVVASVRA ALQPIAENLA SLEPIELVAG ARGHDLAAIS ARLVDLAYAR
      181 VDLVSRRGEF AVRGGILDVF PPTADHPVRV EFFGDEVEEL RAFSVADQRS LPEPIERVRL
      241 APSRELLLTP AVRQRAREMV HEFPTLSGML EKLAEGIPVE GMESLAPALI DRLVPVTQYL
      301 PEGAAVAVLA PERVEGRAIS LGETNREFLA AAWSAATMGA GAPIDLAAGD FLSVADLREA
      361 ALFSAPGEPD PQRAWWTLSS FDAGEAAEDA AGPDASYVRV AANAMPSFQG NVEGAVEHVG
      421 GRLRDGWSLV VAAAGHGLVE RARDVLADSG LAARIVDEVP GDLEAGVAYL VQADAARGFE
      481 VPEAKIGLVA EAEFYGRAAG YDARQGKKLA TRRRNVVDPL QLKPGDYVVH STHGIGRFVE
      541 LVQREVATGA RPTGPTRTGI KQQPKAVREY LVLEYAPSKR GQAGDRLYVP MDQLDLLSRY
      601 VGGESPSLSK MGGSDWSQAK SRARKAVRDI AVELVKLYSA RMASKGHAFG PDTPWQHELE
      661 EAFPYVETLD QLQTIDEVKA DMERPIPMDR LLAGDVGFGK TEVAVRAAFK AIQDGKQVAM
      721 LVPTTLLVKQ HFETFSERFA GFPVHVRALS RFQTDKEARE TIAGLADGTV DLVIGTHRIL
      781 TEKLRFKDLG LLIIDEEQRF GVEHKDQLKK LKTNVDILAM SATPIPRTLE MAVTGIREMS
      841 TLATPPEDRH PILTYVGPYT DQQVAAAIRR EMLREGQVFF VHNRVSSINR VAAQLAELVP
      901 EARIAVAHGQ LNEHVLDQIV NDFWERKFDV LVSTTIIETG LDISNANTII IDRADKYGLS
      961 QLHQLRGRVG RGRERAYAYF LYDPNKPLSE TAHDRLSTIA ANNELGGGMQ IALKDLEIRG
     1021 AGNLLGAEQA GHIAGVGFDL YLRMIGEAVS AFRGDVAEGQ TELRLELPVD AHIPDDYVDS
     1081 ERLRLEAYQK LSAASGPAAK DGQIDQVLEE IVDRYGEPPE AVQHLVAVSR LRRQAQLAGL
     1141 SDVIATGTKL RLAPAKLPDS RRVRLERMYP GAKVFAQNDV ILVPFPTPGG EAPGDGDLIA
     1201 WVSRLIEVIF PAPEPATEEA GAAAAAS
//