LOCUS UJP39470.1 559 aa PRT BCT 25-JAN-2022
DEFINITION Cellulomonas palmilytica thiol reductant ABC exporter
subunit CydD protein.
ACCESSION CP062221-2800
PROTEIN_ID UJP39470.1
SOURCE Cellulomonas palmilytica
ORGANISM Cellulomonas palmilytica
Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae;
Cellulomonas.
REFERENCE 1 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Cellulomonas coenopalmateriei, sp. nov., a novel species of genus
Cellulomonas for degradation of raw lignocellulose biomass; oil
palm empty fruit bunch
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2020) Pilot Plant Development and Training
Institute, King Mongkut's University of Technology Thonburi,
Bangkuntien-Chaitalay, Bangkok 10150, Thailand
COMMENT Bacteria and source DNA available from Enzyme Technology
Laboratory, Pilot Plant Development and Training Institute, King
Mongkut's University of Technology Thonburi.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 19-MAY-2020
Assembly Method :: unicycler v. v0.4.8
Assembly Name :: EW123_hybrid
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10.0x
Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/30/2020 19:03:08
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.13
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,454
CDSs (total) :: 3,400
Genes (coding) :: 3,351
CDSs (with protein) :: 3,351
Genes (RNA) :: 54
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 3
Pseudo Genes (total) :: 49
CDSs (without protein) :: 49
Pseudo Genes (ambiguous residues) :: 0 of 49
Pseudo Genes (frameshifted) :: 8 of 49
Pseudo Genes (incomplete) :: 41 of 49
Pseudo Genes (internal stop) :: 2 of 49
Pseudo Genes (multiple problems) :: 2 of 49
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Cellulomonas palmilytica"
/mol_type="genomic DNA"
/strain="EW123"
/isolation_source="Earthworm bio-fertilizer soil"
/type_material="type strain of Cellulomonas palmilytica"
/db_xref="taxon:2608402"
/country="Thailand: Bangkok"
/lat_lon="13.6771 N 100.4591 E"
/collection_date="Nov-2015"
/collected_by="Enzyme Technology Laboratory, KMUTT"
protein /gene="cydD"
/locus_tag="F1D97_14235"
/inference="COORDINATES: similar to AA
sequence:RefSeq:WP_013771583.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MKPLDPRLLR HARAARWYVA LTVALGLVTA ALVVAQALLL AHVLGRAVTD GVGLGAGAWD
61 ALAPLVGWLV LVVAARVLTT VVQERYAHRA AARAVAELRE RVVAHATALG PRRLGDGRAP
121 EVVALATRGL DDLEPYFVRY LPALVLAATV TPATLLVVLG LEWVSAAILA AVLPLVPLFM
181 WLVGVLTQGR SERGLAAMQR LSAQVLDLVA GLSTLRALGR ERGPGARVQA LGDAHRRATM
241 GTLRIAFLSG MVLELLATLS VALVAVGIGL RLVNGHLDLV TGLAVLVLAP EVLAPLRAVG
301 AQFHASTDGV AAAEAAFTLL EEPLPVASAA TRPAPDLRRT PVRLEHVTVR TARGATPDDL
361 SVVLTPGRVT ALAGPPGSGK STAVEVLLGL LTPDEGRVVI GDDDAVVVAA GAPGTVDLTD
421 FRRQVSWLPQ RPVLEPGTLA QVVGGDDEQR AAAAAVTGLD AVVEQLPEGW ATRVGRGGHG
481 LSVGQAQRVA LTRALVVTAP LVVLDEPTAH LDEASERVVL RTVAALRDAG RTVLLVAHRP
541 ALLACADDVV TLAAEPVAS
//