LOCUS UJP39274.1 1988 aa PRT BCT 25-JAN-2022
DEFINITION Cellulomonas palmilytica DUF4157 domain-containing protein protein.
ACCESSION CP062221-2581
PROTEIN_ID UJP39274.1
SOURCE Cellulomonas palmilytica
ORGANISM Cellulomonas palmilytica
Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae;
Cellulomonas.
REFERENCE 1 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Cellulomonas coenopalmateriei, sp. nov., a novel species of genus
Cellulomonas for degradation of raw lignocellulose biomass; oil
palm empty fruit bunch
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 3834012)
AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R.,
Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C.
TITLE Direct Submission
JOURNAL Submitted (16-SEP-2020) Pilot Plant Development and Training
Institute, King Mongkut's University of Technology Thonburi,
Bangkuntien-Chaitalay, Bangkok 10150, Thailand
COMMENT Bacteria and source DNA available from Enzyme Technology
Laboratory, Pilot Plant Development and Training Institute, King
Mongkut's University of Technology Thonburi.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Date :: 19-MAY-2020
Assembly Method :: unicycler v. v0.4.8
Assembly Name :: EW123_hybrid
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 10.0x
Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 09/30/2020 19:03:08
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.13
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,454
CDSs (total) :: 3,400
Genes (coding) :: 3,351
CDSs (with protein) :: 3,351
Genes (RNA) :: 54
rRNAs :: 2, 2, 2 (5S, 16S, 23S)
complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)
tRNAs :: 45
ncRNAs :: 3
Pseudo Genes (total) :: 49
CDSs (without protein) :: 49
Pseudo Genes (ambiguous residues) :: 0 of 49
Pseudo Genes (frameshifted) :: 8 of 49
Pseudo Genes (incomplete) :: 41 of 49
Pseudo Genes (internal stop) :: 2 of 49
Pseudo Genes (multiple problems) :: 2 of 49
##Genome-Annotation-Data-END##
FEATURES Qualifiers
source /organism="Cellulomonas palmilytica"
/mol_type="genomic DNA"
/strain="EW123"
/isolation_source="Earthworm bio-fertilizer soil"
/type_material="type strain of Cellulomonas palmilytica"
/db_xref="taxon:2608402"
/country="Thailand: Bangkok"
/lat_lon="13.6771 N 100.4591 E"
/collection_date="Nov-2015"
/collected_by="Enzyme Technology Laboratory, KMUTT"
protein /locus_tag="F1D97_13115"
/inference="COORDINATES: protein motif:HMM:NF025078.1"
/note="Derived by automated computational analysis using
gene prediction method: Protein Homology."
/transl_table=11
BEGIN
1 MTTTDQRLDG RAATDRVTAV DLGDAGVLEV ERDAESGVLV ALRGGGRDYL TVGHDGTRAW
61 HGVCTTSERL GEGTLERRVR PTTGEAWTER YRWSGDDLVH VDGVEVRRDA SGRVVACLPG
121 GPDPAPAEHR WFYTHDERGL VEVRGPGRER RVVLGPDGRA REVHDDSGAV VLPHDADGRR
181 LTAVRTAGDT IDDEGRTWVT RTPDGRVSRV FLWDGMRCLA RVDGPLGSPL AAVLSLDPSG
241 TPVRVVTPGG VRRVPRDAYG EGLLDVPDVP GLFGGRVHAG VVHLPLRRLD PRTGTFCEPD
301 PWHGGDDDPR RPAGYTGPVP VEKEPRSAYE VCRGDPVGRS DPTGGVSAGL VLSTLTWSFQ
361 NNVMTFFGID WWFNLFLSLL AAPFAGDKYD FFSSTGLSST DRLGSFGVRR DGFMNVITGG
421 RAFTTQHIVW SPDGEFADLQ RGEVVDPRGA YEPTHYGTVL SLAPTGAAVS FLACGPTTRM
481 PGLPGNLTTW SRHGGLGVPA APGTLTPWFP SGGLHLDTSR EDTRHDVEAT LTELQPGPVG
541 VGDFEQRSVL TSTAATGLAA GARVLVDDGT ALAIATVVGV VAVPGGERVQ LAEELTVTGT
601 TLRVTPLEDA PASSETRPAG APAASLDARG TTTTYAPADL VRVTATSGQV LVARVAHLEA
661 RLPLERPLPA SLAGPIAVAT GTAGPTVPVT ATGTTLDFGT ATPPGQGTTG LLVGGTTTGV
721 RVETPPTGST TTVDLAAPAG TTGFQTVTAS TVLGSRTDAA EADPALTYTP LTAGSAPDGS
781 AGLVLVRVES AGTAHARVVP GAPAHDVVVL DRPLVGTGPF TVERWRTRGA ALTSLTLAQV
841 LSVVVPSPER FEGMPLLLTR VAGEPPTVTA ALTGVDVTDG TTTLATPTAA AGLRAGFPVR
901 VGTEHTAVRD LRCDVTFAPP VDLGGGDLRL VRLEPTGFAY DAVVAAADAI DVRPTVTVGG
961 TPVAAPFLRV RPGDLVEVTS GGTTTWHRVT AASAGRLTVT AAATALTPGA TATVRQAAVD
1021 DPDTGCPFLG IRGARTGTGP TTTATFSLWR SDDLPAGTAA LGIVDGDVTH PVQQSAAAVV
1081 RSVTFSTSFA ASAVDVSVFT HVTTAVLASV TRDGGVLLAE TPPGAGTITT APGQSIVAVA
1141 LEAVGDARTV TLGPGTLLVP DEETTEIDRG QSLTNHELTH TVQYARWGPL WFCAFPMIAL
1201 ELPAILTSDT ELPEFSAFLD ATVAAGADAL WDVTIPQRAG VSIAKDDTLQ VVQGSRIVEV
1261 EVRSVAGDVA RVRVASGTLP TGRVAVRKKQ RSAGWDVSIA ILDLMTHGGL VNLLAGSTWG
1321 GIFWLVGKAF YGLGRAIGGT GDLYAGTVTV GGTTITLAQA ADAEKIPVTG RVTIRRGEDT
1381 VIRSATRAGQ TLSLGEAITF TGDVRVAAYD SHEPGSAFDW YDYRAGTVDA ANHFAVDLGA
1441 DHGLDPEDRV VVRYRSGRPF RTDVLAVAGA RVELSERVPV TGGELSVRIA RVGASDPLGN
1501 ADSAAMVEMG MGWMKWLFDP FGQIEPAVAP GDWTRWLLRV VRWLLGTQNF SLLPFGYVWW
1561 GRLFGIQKEH EAPIEQEASS ESGDVYSPLG RLTGEVVHSD GAIADARATV GDVMRYRYTP
1621 GSRFRSFVVA GRLDGPGVHL SRTLRVMPTR SSTGAAADPN GTVRSDAGTA DPGRFVDPTL
1681 TDHDGDTDPR MLPRNGGGAG DALGFRASAL GSVPVSARVQ RNESIYAAFT RPGDHRVTTL
1741 NGIAGATEAV EAHAKGLQTL WFDLTVADVT VTAAGRTLDA SSPGTSDRLV LVPSQSVDVT
1801 TTPATPRVYR VTALDPTSSV TVSDARLTAV AATTAPVPVE VSRYYAATDG RYTGGLAYAG
1861 MHLSRDLDVP VRTFTVEVVT TLPLRAAARA DATEVTTLAR GTEAFLLVPA NVTVPPAVTS
1921 IGGALPSAGT PDPATRVDAP DAAAFLGATG SAWRVLFPAS ATPGDYELTV TVGDGATPHP
1981 LTCRVTVT
//