LOCUS UJP39200.1 535 aa PRT BCT 25-JAN-2022 DEFINITION Cellulomonas palmilytica RNA polymerase sigma factor protein. ACCESSION CP062221-2503 PROTEIN_ID UJP39200.1 SOURCE Cellulomonas palmilytica ORGANISM Cellulomonas palmilytica Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas. REFERENCE 1 (bases 1 to 3834012) AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R., Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C. TITLE Cellulomonas coenopalmateriei, sp. nov., a novel species of genus Cellulomonas for degradation of raw lignocellulose biomass; oil palm empty fruit bunch JOURNAL Unpublished REFERENCE 2 (bases 1 to 3834012) AUTHORS Siriatcharanon,A.-k., Sutheeworapong,S., Pason,P., Waeonukul,R., Kosugi,A., Ratanakhanokchai,K. and Tachaapaikoon,C. TITLE Direct Submission JOURNAL Submitted (16-SEP-2020) Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi, Bangkuntien-Chaitalay, Bangkok 10150, Thailand COMMENT Bacteria and source DNA available from Enzyme Technology Laboratory, Pilot Plant Development and Training Institute, King Mongkut's University of Technology Thonburi. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Genome-Assembly-Data-START## Assembly Date :: 19-MAY-2020 Assembly Method :: unicycler v. v0.4.8 Assembly Name :: EW123_hybrid Genome Representation :: Full Expected Final Version :: Yes Genome Coverage :: 10.0x Sequencing Technology :: Oxford Nanopore MinION; Illumina HiSeq ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Date :: 09/30/2020 19:03:08 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 4.13 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) :: 3,454 CDSs (total) :: 3,400 Genes (coding) :: 3,351 CDSs (with protein) :: 3,351 Genes (RNA) :: 54 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 45 ncRNAs :: 3 Pseudo Genes (total) :: 49 CDSs (without protein) :: 49 Pseudo Genes (ambiguous residues) :: 0 of 49 Pseudo Genes (frameshifted) :: 8 of 49 Pseudo Genes (incomplete) :: 41 of 49 Pseudo Genes (internal stop) :: 2 of 49 Pseudo Genes (multiple problems) :: 2 of 49 ##Genome-Annotation-Data-END## FEATURES Qualifiers source /organism="Cellulomonas palmilytica" /mol_type="genomic DNA" /strain="EW123" /isolation_source="Earthworm bio-fertilizer soil" /type_material="type strain of Cellulomonas palmilytica" /db_xref="taxon:2608402" /country="Thailand: Bangkok" /lat_lon="13.6771 N 100.4591 E" /collection_date="Nov-2015" /collected_by="Enzyme Technology Laboratory, KMUTT" protein /locus_tag="F1D97_12725" /inference="COORDINATES: similar to AA sequence:RefSeq:WP_013883482.1" /note="Derived by automated computational analysis using gene prediction method: Protein Homology." /transl_table=11 BEGIN 1 MSSQTPHPAL PREFEHPALQ DLVVRGRTHG SVGAAEVRSA CEQAGVEDAK RLKAVVRGLA 61 TAGVTVSDAV APKVAAATSA KTRTTAKAAV AKTATKPAAK AVKAVAAADE EETGATPAAA 121 RAAKAKPAAK SAAKGGTKTT AKGAKTAAKG KDDDEPAEDD EDVEIEEIDE ADLEVDAEAE 181 VEADADASDD DAEEEKPAAP AAAKATEESE DSGFVYSDAD DDDAPAQQVV TAGATADPVK 241 DYLKQIGKVA LLNAEQEVEL AKRIEAGLFA EERLGSGVAM EPKLRRELEW IAGDGRRAKN 301 HLLEANLRLV VSLAKRYTGR GMLFLDLIQE GNLGLIRAVE KFDYTKGYKF STYATWWIRQ 361 AITRAMADQA RTIRIPVHMV EVINKLARVQ RQMLQDLGRE PTPEELAKEL DMTPEKVVEV 421 QKYGREPISL HTPLGEDGDS EFGDLIEDSE AVVPADAVSF TLLQEQLHQV LDTLSEREAG 481 VVSMRFGLTD GQPKTLDEIG KVYGVTRERI RQIESKTMSK LRHPSRSQVL RDYLD //