LOCUS SPS41588.1 1269 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans CUB domain-containing protein protein.
ACCESSION BX284606-3534
PROTEIN_ID SPS41588.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="atrn-1"
/locus_tag="CELE_F33C8.1"
/standard_name="F33C8.1"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A2X0REN2"
/db_xref="InterPro:IPR000742"
/db_xref="InterPro:IPR000859"
/db_xref="InterPro:IPR002049"
/db_xref="InterPro:IPR002165"
/db_xref="InterPro:IPR006652"
/db_xref="InterPro:IPR011043"
/db_xref="InterPro:IPR013032"
/db_xref="InterPro:IPR015915"
/db_xref="InterPro:IPR016201"
/db_xref="InterPro:IPR035914"
/db_xref="UniProtKB/TrEMBL:A0A2X0REN2"
/db_xref="WormBase:WBGene00006432"
intron_pos 39:0 (1/21)
intron_pos 76:2 (2/21)
intron_pos 106:0 (3/21)
intron_pos 143:2 (4/21)
intron_pos 181:2 (5/21)
intron_pos 330:0 (6/21)
intron_pos 416:1 (7/21)
intron_pos 445:0 (8/21)
intron_pos 526:1 (9/21)
intron_pos 574:1 (10/21)
intron_pos 635:2 (11/21)
intron_pos 677:0 (12/21)
intron_pos 730:1 (13/21)
intron_pos 826:1 (14/21)
intron_pos 884:1 (15/21)
intron_pos 939:1 (16/21)
intron_pos 987:1 (17/21)
intron_pos 1020:0 (18/21)
intron_pos 1092:0 (19/21)
intron_pos 1124:2 (20/21)
intron_pos 1159:0 (21/21)
BEGIN
1 MISAREVFPC FIFRVFLLFQ VFSRVHTLTN HANFEFEKSL SSCDKPCYNG VCLNKACVCS
61 KGWYGSQCDH CFGRIRISDN ASYISDGPLD YSPSAKCTWL IEPENSATPL KIRINSFFTE
121 CGWDYLYIYD GDSVYGKQLA ALCGEQPSQE FTAASGKALV HFFSDLAINL NGFNVSYESN
181 RCAYNCSNHG SCLNGKCDCE DGYKGLNCEY QVCQLSGKST ESPCHEGQCV DGRCECLSAR
241 VHGETCQMPV SSSVWDLIHP TNNAPTGKAS HASIAIDDVV WSIGGEFFDG SSDPNNIDVY
301 NVTSRIWSKV EVSGDMPKPR FDHTVVKYKN KLYMFGGVTK TQVRHQTTQA ATNELWIFDM
361 GSKKWAQQIH KNETIIAAPF AVAGHSAHVI RSEMFVIFGY NPLFGFMHHV QIYNFETEEW
421 TVANTSDHVY GRFKHSAVEY TTPTGATAIL VYGGSMWNNT ITDSLMQFDT STKKWSNLPQ
481 SGVQLYLHAA AYLNGLMVVV GGRGSNVTAG SKSECFSNMV QSYDVACKQW SNMSTAPVDL
541 KRFGHSVHVI GQKLYALGGF NGKMKSDVWT LSPAKCSSAT RPDECRLITD GTKCVFVDSS
601 CVPFDPTVSY KSSFASMIKS STPKSFDECT NTPLRLALKT CEEQTDCVSC ASKSGCGWCS
661 SGEQCLPNEQ ECVDGPGMLT SWEKCPQRNS VATMRPCNME NNCGSCRISP HCTWYPIDKA
721 SPCVSKEDLI AVVYEYETKS VLADRNKFLS PSHFPSFFRN ATECPMPCAQ RNNCSDCTDL
781 EQCMWCPSTN RCINLEAYTL SFAYGQCHSW VTSGSGSVIN RVCQAESVVC EEHKTCGECQ
841 RDPGCGWLAD DSKTGLGLCI RGTSTGPLEP KPENSTWYFI DCPACQCNGH STCFTSVGSF
901 PPVTIEKCQS CQNHTTGAHC ERCAPGFYGD ARNGGVCSPC DCHHQADMCD PVSGQCFCKT
961 KGVTGDRCDK CEAKYVGNPR NGTPCFYELA VDFIFTFKLR SDDKDNHTSE IYLYSVPYKK
1021 DTDVTFQISC ESPKGNALVA LNMTSSYVNG LADKSQAMMV DTICDSKGFR RVYVASDKGY
1081 PFGPDSNTTF FVRVYNFNTP VQIVVSFAQS PPINWVLFFV IFAACFIVLL VVAGLLWMIK
1141 VRIEAYRRNQ RRIDEIEHMA SRPFASTKME LSMLSQFSSA GGPTPLSIEP CSNYRAGVFT
1201 LAVRLPTGGK AVTPSGTSGL AVASSLCLLT PQQVGVLQAQ DNGESNSGRK SNFRNLLRLT
1261 IRQRPNNND
//