LOCUS SPS41580.1 1448 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Potassium channel domain-containing
protein protein.
ACCESSION BX284602-1575
PROTEIN_ID SPS41580.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="twk-2"
/locus_tag="CELE_T12C9.3"
/standard_name="T12C9.3d"
/note="Partially confirmed by transcript evidence"
/db_xref="GOA:A0A2X0REA8"
/db_xref="InterPro:IPR003280"
/db_xref="InterPro:IPR013099"
/db_xref="UniProtKB/TrEMBL:A0A2X0REA8"
/db_xref="WormBase:WBGene00006657"
intron_pos 9:0 (1/23)
intron_pos 89:1 (2/23)
intron_pos 118:2 (3/23)
intron_pos 150:2 (4/23)
intron_pos 213:1 (5/23)
intron_pos 289:0 (6/23)
intron_pos 313:1 (7/23)
intron_pos 331:2 (8/23)
intron_pos 369:0 (9/23)
intron_pos 437:2 (10/23)
intron_pos 482:2 (11/23)
intron_pos 519:0 (12/23)
intron_pos 556:1 (13/23)
intron_pos 799:0 (14/23)
intron_pos 845:2 (15/23)
intron_pos 887:1 (16/23)
intron_pos 1006:0 (17/23)
intron_pos 1044:2 (18/23)
intron_pos 1162:2 (19/23)
intron_pos 1216:1 (20/23)
intron_pos 1251:0 (21/23)
intron_pos 1336:0 (22/23)
intron_pos 1399:0 (23/23)
BEGIN
1 MEDFKEIEGL LESARPDDET TTTLQNIRKY AKLALPHIVL VVCVCIYATI GAWIFYTLES
61 PNEDRLKETG RKTIAEMRSN LIYKINNNEK EVWKEDIEKE LMLYSEKLYK AFKEQYVRYS
121 DVRTIGFEGR SSYEEADETG GDSERKRRHR HGNKRGDRGS EKMWTTSSAL FFAATTMATI
181 GYGNIVPVTP LGRLACVLFA LFGAPIAIIT IGDLGKFLSE CTIWLYKHMR KGSARLDSAW
241 KRFRGLEDSI SDDLESASKN QDSSILDMDM DEIDKSEVPV LMVFTIILLY IAFGGILFSI
301 LEDWSYMDAF YYSFISLTTI GFGDIVPENH DYIAIMLIYL GVGLSVTTMC IDLAGIQYIQ
361 KIHYFGRKFQ GTDLLQYLKK KRMLERRLAM GQGEEILRKY VHAVEKFERE QEQLQQKMEE
421 EDPPSIESKG FDNSMMRIDD SLSAFQLRFY DTYDEEDLFS PTIHSVRSFQ PSVWSHSSAR
481 SQSFCRFQRN RGASWDESGP SLSEHCSLST EPSVHIRQAY WDNYHSPTPS VISFLHRHLY
541 SPSIASSISF DYDCLAKDAK SARRSNSCPP IEIPSPPPSN SVSSPRRPLS ARTGSTIRTK
601 HAIASEPIYT AAPLSFRLPE PFMLSNLAAI CDAFDDADAC NNLVFGAFRE SQLAANHYDS
661 TDGFSGKVQL HPQPDILHPP PPPPYVPKLS LSPKRLSVID ENKISTSPEP VLKRKNKERI
721 ARQQNPLHSF DWLNVSPRRF RPELCIKEDL PKLFKLVRNS TKISLESPTQ TSETTETPLP
781 DLSCDSNPES VVLISPRSPI GLACMQDWDS YIQMLEEASR EFQYTPEDID EEIEEEEDCD
841 EDDDSPSFDP QTSESDEEPM AVFVEEEKRP PPQTEIDLGA FELVDSGLTP EALLSKDEPV
901 IFHQSMPVHS VHHDTVQTEA ALANLMAAPS SMLTNAIPPI MVEDNYCFVV DGERVRMGDI
961 LGDDQWWRHT SRPTKYFYSD DLRQFHRVNC ITAKGKVITA KLATQMPHQP TTSMSASLSH
1021 QQSLSASSHA QIHPQHHSMS NTPRSSISGG THQTTHTAPT SRTHHDANKV PLNNVYKVIR
1081 FYSFWKTCTS FHRIVTMIDK VVDEPSTSSG GTTFKKRLFV QYLWRNAKAV EKARVQKEFD
1141 PRRQRLLRFV TDPAARKRFQ KIFVEDDLFA VIIDENGNES ESEEDLSDSE ENQNNTDPQN
1201 LLRRLKMEVT THPGKDGLEV PVYSNDDEHP LDGPHTILHA VQCPKKFIAT VAPTEVADTS
1261 CFVCDSNLVT MQMIEEDADH IHWKQTMSTT HYYATDNWKD DFYRVTPLTC RGVLRGAYRV
1321 GKSRCGKIQR VDIIRVYRVT RHFSCWKTVP VFHRVISLVE AALPYKQMTT KQKQLLKANG
1381 NKLINRLFIQ YYWRFNQSFL NREQVLSEYA ESTKRTRAKK SWIRVVKNVA RLRAATSILA
1441 AAQKNNTL
//