LOCUS SMQ11450.1 646 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans One cut domain family member protein.
ACCESSION BX284602-2483
PROTEIN_ID SMQ11450.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 15279421)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 15279421)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="II"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ceh-38"
/locus_tag="CELE_F22D3.1"
/standard_name="F22D3.1d"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1X7RCT5"
/db_xref="InterPro:IPR001356"
/db_xref="InterPro:IPR003350"
/db_xref="InterPro:IPR009057"
/db_xref="InterPro:IPR010982"
/db_xref="UniProtKB/TrEMBL:A0A1X7RCT5"
/db_xref="WormBase:WBGene00000459"
intron_pos 13:2 (1/7)
intron_pos 117:2 (2/7)
intron_pos 152:0 (3/7)
intron_pos 257:1 (4/7)
intron_pos 419:2 (5/7)
intron_pos 502:0 (6/7)
intron_pos 531:0 (7/7)
BEGIN
1 MESSRTAATS TNGTEKSRRR NTDYLQIDPS STFINNTGRG FAEELPENFL DTISPHPITP
61 SASTSSATSA TEEPATSSAP QLASLAPMSM SSEQPSSSFS SASLLSSSYE TIKNEPEDYR
121 FSGSTAGLLS PLHVDSRRRE SHDFNTSPYI KEEEDLDGSH LLMGGIRPDT PTNDRSTDLG
181 SISSLLNEDH HTNTIGQSPS PRSTFGSDPT PMIQRQLIKN EDGVSPGSMG FSKNHQGYQK
241 PRNGDRMEYE KAPYQRNSRK QKKPLGLLNQ ALSSVISTPT ISSSNIPTPP SAHIAQPRRI
301 YSTQDSNDPL NAEIGDDIYI DTKDLCKRIA FELKNHSIPQ AIFAERILCR SQGTLSDLLR
361 NPKPWNKLKS GRETFRRMYN WVAQPLATRL AILDMKTEDV NRASGMSPPT PAQNVRTHSF
421 RRSTSDHDGP VSKRPRLVFT DIQKRTLQAI FKETQRPSRE MQQTIAEHLR LDLSTVANFF
481 MNARRRSRLG GNIDEPTPFQ QVKNISPPPV GDTSDALLNG DDHVPLLNTV MAEMYKEGAI
541 ATSNHSAEQR EMIERGFGVS IPGPSHSGEL LNGDSHEDDE ELDELNDSEL AYEEDVEIGD
601 EEEEDEEQAN GDILPTPKVE ELEEKTVIKE EAPDDGEYGA TKLAAN
//