LOCUS       SIU02254.1               848 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 probable
            atp-dependent protease atp-binding subunit clpc1 protein.
ACCESSION   LT708304-3668
PROTEIN_ID  SIU02254.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="clpC"
                     /locus_tag="BQ2027_MB3627C"
                     /note="Mb3627c, clpC, len: 848 aa. Equivalent to Rv3596c,
                     len: 848 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 848 aa overlap). Probable clpC,
                     ATP-dependent clp protease ATP-binding subunit (EC
                     3.4.-.-), equivalent to P24428|CLPC_MYCLE PROBABLE
                     ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT from
                     Mycobacterium leprae (848 aa), FASTA scores: opt: 5286,
                     E(): 0, (97.15% identity in 845 aa overlap). Also highly
                     similar to members of the clpA/clpB family e.g.
                     Q9S6T8|SCE94.24c from Streptomyces coelicolor (841 aa)
                     FASTA scores: opt: 4399, E(): 0, (81.0% identity in 848 aa
                     overlap); Q9KGG2|CLPC|BH0103 from Bacillus halodurans (813
                     aa), FASTA scores: opt: 3279, E(): 3.8e-173, (61.9%
                     identity in 808 aa overlap); Q55662|CLPC|SLL0020 from
                     Synechocystis sp. strain PCC 6803 (821 aa), FASTA scores:
                     opt: 3201, E(): 7.6e-169, (60.5% identity in 820 aa
                     overlap); P51332|CLPC_PORPU from Porphyra purpurea (821
                     aa), FASTA scores: opt: 3045, E(): 3e-160, (57.65%
                     identity in 817 aa overlap); P37571|CLPC_BACSU|MECB from
                     Bacillus subtilis (810 aa), FASTA scores: opt: 2969, E():
                     4.6e-156, (61.15% identity in 811 aa overlap); etc.
                     Contains PS00017 ATP/GTP-binding site motif A (P-loop).
                     BELONGS TO THE CLPA/CLPB FAMILY, CLPC SUBFAMILY. Protein
                     product from Mb3627c detected using shotgun mass
                     spectrometry. Mb3627c found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /db_xref="GOA:P0A523"
                     /db_xref="InterPro:IPR001270"
                     /db_xref="InterPro:IPR001943"
                     /db_xref="InterPro:IPR003593"
                     /db_xref="InterPro:IPR003959"
                     /db_xref="InterPro:IPR004176"
                     /db_xref="InterPro:IPR018368"
                     /db_xref="InterPro:IPR019489"
                     /db_xref="InterPro:IPR027417"
                     /db_xref="InterPro:IPR036628"
                     /db_xref="InterPro:IPR041546"
                     /db_xref="UniProtKB/Swiss-Prot:P0A523"
                     /experiment="experimental evidence, no additional details
                     recorded"
BEGIN
        1 MFERFTDRAR RVVVLAQEEA RMLNHNYIGT EHILLGLIHE GEGVAAKSLE SLGISLEGVR
       61 SQVEEIIGQG QQAPSGHIPF TPRAKKVLEL SLREALQLGH NYIGTEHILL GLIREGEGVA
      121 AQVLVKLGAE LTRVRQQVIQ LLSGYQGKEA AEAGTGGRGG ESGSPSTSLV LDQFGRNLTA
      181 AAMEGKLDPV IGREKEIERV MQVLSRRTKN NPVLIGEPGV GKTAVVEGLA QAIVHGEVPE
      241 TLKDKQLYTL DLGSLVAGSR YRGDFEERLK KVLKEINTRG DIILFIDELH TLVGAGAAEG
      301 AIDAASILKP KLARGELQTI GATTLDEYRK YIEKDAALER RFQPVQVGEP TVEHTIEILK
      361 GLRDRYEAHH RVSITDAAMV AAATLADRYI NDRFLPDKAI DLIDEAGARM RIRRMTAPPD
      421 LREFDEKIAE ARREKESAID AQDFEKAASL RDREKTLVAQ RAEREKQWRS GDLDVVAEVD
      481 DEQIAEVLGN WTGIPVFKLT EAETTRLLRM EEELHKRIIG QEDAVKAVSK AIRRTRAGLK
      541 DPKRPSGSFI FAGPSGVGKT ELSKALANFL FGDDDALIQI DMGEFHDRFT ASRLFGAPPG
      601 YVGYEEGGQL TEKVRRKPFS VVLFDEIEKA HQEIYNSLLQ VLEDGRLTDG QGRTVDFKNT
      661 VLIFTSNLGT SDISKPVGLG FSKGGGENDY ERMKQKVNDE LKKHFRPEFL NRIDDIIVFH
      721 QLTREEIIRM VDLMISRVAG QLKSKDMALV LTDAAKALLA KRGFDPVLGA RPLRRTIQRE
      781 IEDQLSEKIL FEEVGPGQVV TVDVDNWDGE GPGEDAVFTF TGTRKPPAEP DLAKAGAHSA
      841 GGPEPAAR
//