LOCUS       SIU02117.1               124 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 30s
            ribosomal protein s13 rpsm protein.
ACCESSION   LT708304-3531
PROTEIN_ID  SIU02117.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="rpsM"
                     /locus_tag="BQ2027_MB3489C"
                     /note="Mb3489c, rpsM, len: 124 aa. Equivalent to Rv3460c,
                     len: 124 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 124 aa overlap). Probable rpsM, 30S
                     ribosomal protein S13, equivalent to
                     Q9X7A1|RS13_MYCLE|RPSM|ML1960|MLCB1222.30c 30S RIBOSOMAL
                     PROTEIN S13 from Mycobacterium leprae (124 aa), FASTA
                     scores: opt: 762, E(): 1.5e-43, (92.75% identity in 124 aa
                     overlap); and P45813|RS13_MYCBO|RPSM from Mycobacterium
                     bovis (123 aa), FASTA scores: opt: 727, E(): 3e-41,
                     (98.25% identity in 114 aa overlap). Also highly similar
                     to others e.g. O86773|RS13_STRCO|SC6G4.05 from
                     Streptomyces coelicolor (126 aa), FASTA scores: opt: 631,
                     E(): 6.2e-35, (73.75% identity in 122 aa overlap);
                     Q9RA65|RPS13 from Thermus aquaticus (subsp. thermophilus)
                     (126 aa), FASTA scores: opt: 552, E(): 9.8e-30, (62.6%
                     identity in 123 aa overlap); P20282|RS13_BACSU|RPSM from
                     Bacillus subtilis (120 aa), FASTA scores: opt: 533, E():
                     1.7e-28, (64245% identity in 121 aa overlap); etc.
                     Contains ribosomal protein S13 signature (PS00646).
                     BELONGS TO THE S13P FAMILY OF RIBOSOMAL PROTEINS. Protein
                     product from Mb3489c detected using shotgun mass
                     spectrometry and SWATH mass spectrometry. Mb3489c found to
                     be expressed during exponential growth in Sauton's minimal
                     media by RNA-sequencing (TPM > 20)."
                     /db_xref="GOA:P45813"
                     /db_xref="InterPro:IPR001892"
                     /db_xref="InterPro:IPR010979"
                     /db_xref="InterPro:IPR018269"
                     /db_xref="InterPro:IPR019980"
                     /db_xref="InterPro:IPR027437"
                     /db_xref="UniProtKB/Swiss-Prot:P45813"
BEGIN
        1 MARLVGVDLP RDKRMEVALT YIFGIGRTRS NEILAATGID RDLRTRDLTE EQLIHLRDYI
       61 EANLKVEGDL RREVQADIRR KIEIGCYQGL RHRRGMPVRG QRTKTNARTR KGPKRTIAGK
      121 KKAR
//