LOCUS       SIU02115.1               201 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 30s
            ribosomal protein s4 rpsd protein.
ACCESSION   LT708304-3529
PROTEIN_ID  SIU02115.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="rpsD"
                     /locus_tag="BQ2027_MB3487C"
                     /note="Mb3487c, rpsD, len: 201 aa. Equivalent to Rv3458c,
                     len: 201 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 201 aa overlap). Probable rpsD, 30S
                     ribosomal protein S4, equivalent to
                     Q9X799|RS4_MYCLE|RPSD|ML1958|MLCB1222.28c 30S RIBOSOMAL
                     PROTEIN S4 from Mycobacterium leprae (201 aa), FASTA
                     scores: opt: 1271, E(): 2.2e-73, (93.5% identity in 201 aa
                     overlap); and P45811|RS4_MYCBO|RPSD from Mycobacterium
                     bovis (131 aa), FASTA scores: opt: 867, E(): 4.9e-48,
                     (100.0% identity in 130 aa overlap). Also highly similar
                     to others e.g. P81288|RS4_BACST|RPSD from Bacillus
                     stearothermophilus (198 aa), FASTA scores: opt: 665, E():
                     4e-35, (52.25% identity in 201 aa overlap);
                     Q9K7Z8|RPSD|BH3209 from Bacillus halodurans (200 aa),
                     FASTA scores: opt: 626, E(): 1.2e-32, (48.75% identity in
                     203 aa overlap); Q9X1I3|RS4_THEMA|RPSD|TM1473 from
                     Thermotoga maritima (209 aa), FASTA scores: opt: 591, E():
                     2e-30, (45.0% identity in 209 aa overlap); etc. Contains
                     ribosomal protein S4 signature (PS00632) and ATP/GTP
                     binding site motif (PS00017). BELONGS TO THE S4P FAMILY OF
                     RIBOSOMAL PROTEINS. Protein product from Mb3487c detected
                     using shotgun mass spectrometry and SWATH mass
                     spectrometry. Mb3487c found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /db_xref="GOA:P45811"
                     /db_xref="InterPro:IPR001912"
                     /db_xref="InterPro:IPR002942"
                     /db_xref="InterPro:IPR005709"
                     /db_xref="InterPro:IPR018079"
                     /db_xref="InterPro:IPR022801"
                     /db_xref="InterPro:IPR036986"
                     /db_xref="UniProtKB/Swiss-Prot:P45811"
BEGIN
        1 MARYTGPVTR KSRRLRTDLV GGDQAFEKRP YPPGQHGRAR IKESEYLLQL QEKQKARFTY
       61 GVMEKQFRRY YEEAVRQPGK TGEELLKILE SRLDNVIYRA GLARTRRMAR QLVSHGHFNV
      121 NGVHVNVPSY RVSQYDIVDV RDKSLNTVPF QIARETAGER PIPSWLQVVG ERQRVLIHQL
      181 PERAQIDVPL TEQLIVEYYS K
//