LOCUS SIU02004.1 1338 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 ppe family protein ppe54 protein. ACCESSION LT708304-3418 PROTEIN_ID SIU02004.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="PPE54" /locus_tag="BQ2027_MB3375C" /note="Mb3375c, PPE54, len: 1338 aa. Similar to 3' end of Rv3343c, len: 2523 aa, from Mycobacterium tuberculosis strain H37Rv, (98.6% identity in 1151 aa overlap). Member of the Mycobacterium tuberculosis PPE family, MPTR subgroup of Gly-, Asn-rich proteins. Most similar to O50379|Rv3350c|MTV004.07c|MTV004_5 from Mycobacterium tuberculosis strain H37Rv (3716 aa), FASTA scores: opt: 4672, E(): 4e-211, (44.2% identity in 3174 aa overlap); and also similar to MTV004_3, MTCY63_9, MTY13E10_17, MTY13E10_16, MTCY180_1, MTV050_1, MTCY3C7_23, MTV014_3, MTCY63_10; etc. REMARK-M.bovis-M.tuberculosis: In Mycobacterium bovis, a 3555 bp deletion leads to a shorter product compared to its homolog in Mycobacterium tuberculosis strain H37Rv." /db_xref="InterPro:IPR000030" /db_xref="InterPro:IPR002989" /db_xref="InterPro:IPR038332" /db_xref="UniProtKB/TrEMBL:A0A1R3Y3X3" BEGIN 1 MSFVVMPPEI NSLLIYTGAG PGPLLAAAAA WDELAAELGS AAAAFGSVTS GLVGGIWQGP 61 SSVAMAAAAA PYAGWLSAAA ASAESAAGQA RAVVGVFEAA LAATVDPFVI AANRSRLVSL 121 ALSNLFGQNT PAIAAAEFDY ELMWAQDVAA MLGYHTGASA AAEALAPFGS PLASLAAAAE 181 PAKSLAVNLG LANVGLFNAG SGNVGSYNVG AGNVGSYNVG GGNIGGNNVG LGNVGFGNVG 241 LANSGLTPGL MGLGNIGFGN AGSYNFGLAN MGVGNIGFAN TGSGNFGIGL TGDNLTGFGG 301 FNTGSGNVGL FNSGTGNVGF FNSGTGNWGV FNSGSYNTGI GNSGIASTGL FNAGGFNTGV 361 VNAGSYNTGS FNAGQANTGG FNPGSVNTGW LNTGDTNTGV ANSGDVNTGA FISGNYSNGV 421 LWRGDYQGLL GFSYRPAVLP QTPFLDLTLT GGLGSVVIPA IDIPAIRPEF SANVAIDSFT 481 VPSIPIPQID LAATTVSVGL GPITVPHLDI PRVPVTLNYL FGSQPGGPLK IGPITGLFNT 541 PIGLTPLALS QIVIGASSSQ GTITAFLANL PFSTPVVTID EIPLLASITG HSEPVDIFPG 601 GLTIPAMNPL SINLSGGTGA VTIPAITIGE IPFDLVAHST LGPVHILIDL PAVPGFGNTT 661 GAPSSGFFNS GAGGVSGFGN VGAMVSGGWN QAPSALLGGG SGVFNAGTLH SGVLNFGSGM 721 SGLFNTSVLG LGAPALVSGL GSVGQQLSGL LASGTALHQG LVLNFGLADV GLGNVGLGNV 781 GDFNLGAGNV GGFNVGGGNI GGNNVGLGNV GWGNFGLGNS GLTPGLMGLG NIGFGNAGSY 841 NFGLANMGVG NIGFANTGSG NFGIGLTGDN LTGFGGFNTG SGNVGLFNSG TGNVGFFNSG 901 TGNWGVFNSG SYNTGIGNSG IASTGLFNAG GFNTGVVNAG SYNTGSFNAG QANTGGFNPG 961 SVNTGWLNTG DTNTGVANSG DVNTGAFISG NYSNGAFWRG DYQGLLGFSY TSTIIPEFTV 1021 ANIHASGGAG PIIVPSIQFP AIPLDLSATG HIGGFTIPPV SISPITVRID PVFDLGPITV 1081 QDITIPALGL DPATGVTVGP IFSSGSIIDP FSLTLLGFIN VNVPAIQTAP SEILPFTVLL 1141 SSLGVTHLTP EITIPGFHIP VDPIHVELPL SVTIGPFVSP EITIPQLPLG LALSGATPAF 1201 AFPLEITIDR IPVVLDVNAL LGPINAGLVI PPVPGFGNTT AVPSSGFFNI GGGGGLSGFH 1261 NLGAGMSGVL NAISDPLLGS ASGFANFGTQ LSGILNRGAD ISGVYNTGAL GLITSALVSG 1321 FGNVGQQLAG LIYTGTGP //