LOCUS       SIU01552.1               176 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 PROBABLE
            16S RRNA PROCESSING PROTEIN RIMM protein.
ACCESSION   LT708304-2966
PROTEIN_ID  SIU01552.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="rimM"
                     /locus_tag="BQ2027_MB2931C"
                     /note="Mb2931c, rimM, len: 176 aa. Equivalent to Rv2907c,
                     len: 176 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 176 aa overlap). Probable rimM, 16S
                     rRNA processing protein, equivalent to O33016|RIMM_MYCLE
                     PROBABLE 16S RRNA PROCESSING protein from Mycobacterium
                     leprae (179 aa), FASTA scores: opt: 797, E(): 2.4e-46,
                     (73.15% identity in 175 aa overlap). Also highly similar
                     to others e.g. O69881|RIMM_STRCO from Streptomyces
                     coelicolor (188 aa), FASTA scores: opt: 485, E(): 2.3e-25,
                     (48.85% identity in 176 aa overlap); Q9KA14|RIMM_BACHD
                     from Bacillus halodurans (173 aa), FASTA scores: opt: 289,
                     E(): 3.2e-12, (30.65% identity in 173 aa overlap);
                     P21504|RIMM_ECOLI|RIMM|B2608 from Escherichia coli strain
                     K12 (182 aa), FASTA scores: opt: 237, E(): 1e-08, (29.4%
                     identity in 177 aa overlap). BELONGS TO THE RIMM FAMILY.
                     Mb2931c found to be expressed during exponential growth in
                     Sauton's minimal media by RNA-sequencing (TPM > 20)."
                     /db_xref="GOA:P66654"
                     /db_xref="InterPro:IPR002676"
                     /db_xref="InterPro:IPR009000"
                     /db_xref="InterPro:IPR011033"
                     /db_xref="InterPro:IPR011961"
                     /db_xref="InterPro:IPR027275"
                     /db_xref="InterPro:IPR036976"
                     /db_xref="UniProtKB/Swiss-Prot:P66654"
                     /experiment="experimental evidence, no additional details
                     recorded"
BEGIN
        1 MELVVGRVVK SHGVTGEVVV EIRTDDPADR FAPGTRLRAK GPFDGGAEGS AVSYVIESVR
       61 QHGGRLLVRL AGVADRDAAD ALRGSLFVID ADDLPPIDEP DTYYDHQLVG LMVQTATGEG
      121 VGVVTEVVHT AAGELLAVKR DSDEVLVPFV RAIVTSVSLD DGIVEIDPPH GLLNLE
//