LOCUS       SIU01363.1               289 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 PROBABLE
            DIAMINOPIMELATE EPIMERASE DAPF (DAP EPIMERASE) protein.
ACCESSION   LT708304-2777
PROTEIN_ID  SIU01363.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="dapF"
                     /locus_tag="BQ2027_MB2745C"
                     /note="Mb2745c, dapF, len: 289 aa. Equivalent to Rv2726c,
                     len: 289 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 289 aa overlap). Probable dapF,
                     diaminopimelate epimerase (EC 5.1.1.7), equivalent to
                     P46814|DAPF_MYCLE|ML0996|B2235_C3_233 DIAMINOPIMELATE
                     EPIMERASE from Mycobacterium leprae (296 aa), FASTA
                     scores: opt: 1488, E(): 2.1e-83, (76.05% identity in 292
                     aa overlap). Also highly similar to
                     O69969|DAPF_STRCO|SC4H2.14 from Streptomyces coelicolor
                     (289 aa), FASTA scores: opt: 439, E(): 1.4e-19, (45.6%
                     identity in 296 aa overlap); and similar to many e.g.
                     O29511|DAPF_ARCFU|AF0747 from Archaeoglobus fulgidus (280
                     aa), FASTA scores: opt: 310, E(): 9.7e-12, (33.8% identity
                     in 296 aa overlap); Q51564|DAPF_PSEAE|PA5278 from
                     Pseudomonas aeruginosa (276 aa), FASTA scores: opt: 272,
                     E(): 2e-09, (30.15% identity in 292 aa overlap);
                     P08885|DAPF_ECOLI|B3809 from Escherichia coli strain K12
                     (274 aa), FASTA scores: opt: 266, E(): 4.5e-09, (30.4%
                     identity in 296 aa overlap); etc. BELONGS TO THE
                     DIAMINOPIMELATE EPIMERASE FAMILY. Protein product from
                     Mb2745c detected using shotgun mass spectrometry and SWATH
                     mass spectrometry. Mb2745c found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /db_xref="GOA:P63898"
                     /db_xref="InterPro:IPR001653"
                     /db_xref="InterPro:IPR018510"
                     /db_xref="UniProtKB/Swiss-Prot:P63898"
                     /experiment="experimental evidence, no additional details
                     recorded"
BEGIN
        1 MIFAKGHGTQ NDFVLLPDVD AELVLTAARV AALCDRRKGL GADGVLRVTT AGAAQAVGVL
       61 DSLPEGVRVT DWYMDYRNAD GSAAQMCGNG VRVFAHYLRA SGLEVRDEFV VGSLAGPRPV
      121 TCHHVEAAYA DVSVDMGKAN RLGAGEAVVG GRRFHGLAVD VGNPHLACVD SQLTVDGLAA
      181 LDVGAPVSFD GAQFPDGVNV EVLTAPVDGA VWMRVHERGV GETRSCGTGT VAAAVAALAA
      241 VGSPTGTLTV HVPGGEVVVT VTDATSFLRG PSVLVARGDL ADDWWNAMG
//