LOCUS       SIU01163.1               408 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 probable
            l,d-transpeptidase ldtb protein.
ACCESSION   LT708304-2577
PROTEIN_ID  SIU01163.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /gene="ldtb"
                     /locus_tag="BQ2027_MB2547C"
                     /note="Mb2547c, lppS, len: 408 aa. Equivalent to Rv2518c,
                     len: 408 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 408 aa overlap). Probable lppS,
                     conserved lipoprotein, highly similar to O07707|MLCL383.3
                     HYPOTHETICAL 43.6 KDA PROTEIN from Mycobacterium leprae
                     (407 aa), FASTA scores: opt: 2300, E(): 1.2e-130, (82.5%
                     identity in 406 aa overlap); Q9CCU5|LPPS|ML0426 PUTATIVE
                     SECRETED PROTEIN from Mycobacterium leprae (404 aa), FASTA
                     scores: opt: 2279, E(): 2.3e-129, (82.4% identity in 403
                     aa overlap); and Q9CB49|ML2446 POSSIBLE LIPOPROTEIN from
                     Mycobacterium leprae (441 aa), FASTA scores: opt: 736,
                     E(): 8.4e-37, (35.6% identity in 399 aa overlap). Also
                     similar to other proteins from several organisms e.g.
                     Q9X811|SC6G10.26c PUTATIVE SECRETED PROTEIN from
                     Streptomyces coelicolor (424 aa), FASTA scores: opt: 867,
                     E(): 1.1e-44, (32.25% identity in 403 aa overlap);
                     Q9L1E8|SC3D11.14 PUTATIVE LIPOPROTEIN from Streptomyces
                     coelicolor (416 aa), FASTA scores: opt: 737, E(): 7e-37,
                     (32.95% identity in 413 aa overlap); Q9KYV1|SCE22.11
                     PUTATIVE LIPOPROTEIN from Streptomyces coelicolor (407
                     aa), FASTA scores: opt: 721, E(): 6.2e-36, (33.5% identity
                     in 400 aa overlap). And similar to several hypothetical
                     mycobacterial proteins e.g.
                     Q11149|Y483_MYCTU|Rv0483|MT0501|MTCY20G9.09 (451 aa),
                     FASTA scores: opt: 763, E(): 2.1e-38, (34.85% identity in
                     402 aa overlap). Has very long signal sequence and
                     appropriately positioned PS00013 Prokaryotic membrane
                     lipoprotein lipid attachment site. Protein product from
                     Mb2547c detected using shotgun mass spectrometry and SWATH
                     mass spectrometry. Mb2547c found to be expressed during
                     exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /db_xref="GOA:A0A1R3Y1G0"
                     /db_xref="InterPro:IPR005490"
                     /db_xref="InterPro:IPR038063"
                     /db_xref="InterPro:IPR041280"
                     /db_xref="UniProtKB/TrEMBL:A0A1R3Y1G0"
BEGIN
        1 MPKVGIAAQA GRTRVRRAWL TALMMTAVMI GAVACGSGRG PAPIKVIADK GTPFADLLVP
       61 KLTASVTDGA VGVTVDAPVS VTAADGVLAA VTMVNDNGRP VAGRLSPDGL RWSTTEQLGY
      121 NRRYTLNATA LGLGGAATRQ LTFQTSSPAH LTMPYVMPGD GEVVGVGEPV AIRFDENIAD
      181 RGAAEKAIKI TTNPPVEGAF YWLNNREVRW RPEHFWKPGT AVDVAVNTYG VDLGEGMFGE
      241 DNVQTHFTIG DEVIATADDN TKILTVRVNG EVVKSMPTSM GKDSTPTANG IYIVGSRYKH
      301 IIMDSSTYGV PVNSPNGYRT DVDWATQISY SGVFVHSAPW SVGAQGHTNT SHGCLNVSPS
      361 NAQWFYDHVK RGDIVEVVNT VGGTLPGIDG LGDWNIPWDQ WRAGNAKA
//