LOCUS SIU00956.1 274 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 PROBABLE SUGAR-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER USPB protein. ACCESSION LT708304-2370 PROTEIN_ID SIU00956.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="uspB" /locus_tag="BQ2027_MB2344" /note="Mb2344, uspB, len: 274 aa. Equivalent to Rv2317, len: 274 aa, from Mycobacterium tuberculosis strain H37Rv, (100.0% identity in 274 aa overlap). Probable uspB, sugar-transport integral membrane protein ABC transporter (see citation below), most similar to Q9CBN7|USPE|ML1769 SUGAR TRANSPORT INTEGRAL MEMBRANE PROTEIN from Mycobacterium leprae (274 aa), FASTA scores: opt: 1522, E(): 3.4e-89, (85.0% identity in 274 aa overlap); and similar to O32941|ML1425|MLCB2052.29 PROBABLE ABC-TRANSPORT PROTEIN, INNER MEMBRANE COMPONENT from Mycobacterium leprae (283 aa), FASTA scores: opt: 630, E(): 8.4e-33, (36.55% identity in 268 aa overlap). Also similar to other integral membrane proteins e.g. P73854|LACG|SLR1723 LACTOSE TRANSPORT SYSTEM PERMEASE PROTEIN from Synechocystis sp. strain PCC 6803 (270 aa), FASTA scores: opt: 605, E(): 3.1e-31, (36.0% identity in 264 aa overlap); Q9F3B8|SC5F1.11 PUTATIVE SUGAR TRANSPORT INTEGRAL MEMBRANE PROTEIN from Streptomyces coelicolor (307 aa), FASTA scores: opt: 582, E(): 9.7e-30, (34.45% identity in 264 aa overlap); etc. Also similar to O53483|Rv2039c|MTV018.26c SUGAR TRANSPORT PROTEIN from Mycobacterium tuberculosis (280 aa), FASTA scores: opt: 630, E(): 8.3e-89, (37.7% identity in 268 aa overlap)." /db_xref="GOA:A0A1R3Y122" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR035906" /db_xref="UniProtKB/TrEMBL:A0A1R3Y122" BEGIN 1 MSSPSRVSNT AVYAVLTIGA VITLSPFLLG LLTSFTSAHQ FATGTPLQLP RPPTLANYAD 61 IADAGFRRAA VVTALMTAVI LLGQLTFSVL AAYAFARLQF RGRDALFWVY VATLMVPGTV 121 TVVPLYLMMA QLGLRNTFWA LVLPFMFGSP YAIFLLREHF RLIPDDLINA ARLDGANTLD 181 VIVHVVIPSS RPVLAALAMI TVVSQWNNFM WPLVITSGHK WRVLTVATAD LQSRFNDQWT 241 LVMAATTVAI VPLIALFVTF QRHIVASIVV SGLK //