LOCUS SIU00955.1 290 aa PRT BCT 25-MAY-2020 DEFINITION Mycobacterium tuberculosis variant bovis AF2122/97 PROBABLE SUGAR-TRANSPORT INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER USPA protein. ACCESSION LT708304-2369 PROTEIN_ID SIU00955.1 SOURCE Mycobacterium tuberculosis variant bovis AF2122/97 ORGANISM Mycobacterium tuberculosis variant bovis AF2122/97 Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex. REFERENCE 1 AUTHORS Malone K.M. JOURNAL Submitted (06-DEC-2016) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine, University College Dublin, D4, Ireland REFERENCE 2 AUTHORS Malone M K., Farrell D., Malone K. JOURNAL Submitted (15-APR-2020) to the INSDC. School of Veterinary Medicine, Tuberculosis Molecular Microbiology Research Group, University College Dublin, Tuberculosis Molecular Microbiology Research Group, School of Veterinary Medicine,, University College Dublin, D4, Ireland FEATURES Qualifiers source /organism="Mycobacterium tuberculosis variant bovis AF2122/97" /chromosome="Mycobacterium_bovis_AF212297" /isolate="AF2122/97" /mol_type="genomic DNA" /isolation_source="Mycobacterium bovis subsp. bovis strain AF2122/97. This strain is a fully virulent strain that was isolated in 1997 in the UK from a cow suffering necrotic lesions in lung and bronchomediastinal lymph nodes. The strain was also reported to infect and persist in badgers that are considered to be a significant source of bovine infection." /db_xref="taxon:233413" protein /transl_table=11 /gene="uspA" /locus_tag="BQ2027_MB2343" /note="Mb2343, uspA, len: 290 aa. Equivalent to Rv2316, len: 290 aa, from Mycobacterium tuberculosis strain H37Rv, (99.7% identity in 290 aa overlap). Probable uspA, sugar-transport integral membrane protein ABC transporter (see citation below), most similar to Q9CBN8|USPA|ML1768 SUGAR TRANSPORT INTEGRAL MEMBRANE PROTEIN from Mycobacterium leprae (328 aa), FASTA scores: opt: 1593, E(): 1.9e-93, (82.35% identity in 289 aa overlap); and similar to O32940|ML1426|MLCB2052.28 POSSIBLE SUGAR TRANSPORT PROTEIN (PROBABLE ABC-TRANSPORT PROTEIN, INNER MEMBRANE COMPONENT) from Mycobacterium leprae (319 aa), FASTA scores: opt: 600, E(): 9.2e-31, (34.25% identity in 295 aa overlap). Also similar to other proteins involved in transport e.g. Q9X860|SCE134.05c PUTATIVE BINDING PROTEIN DEPENDENT TRANSPORT PROTEIN from Streptomyces coelicolor (327 aa), FASTA scores: opt: 639, E(): 3.2e-33, (40.45% identity in 272 aa overlap); Q9K6N9|BH3689 SUGAR TRANSPORT SYSTEM (PERMEASE) from Bacillus halodurans (300 aa), FASTA scores: opt: 590, E(): 3.7e-30, (35.65% identity in 289 aa overlap); etc." /db_xref="GOA:A0A1R3Y1M8" /db_xref="InterPro:IPR000515" /db_xref="InterPro:IPR035906" /db_xref="UniProtKB/TrEMBL:A0A1R3Y1M8" BEGIN 1 MRDAPRRRTA LAYALLAPSL VGVVAFLLLP ILVVVWLSLH RWDLLGPLRY VGLTNWRSVL 61 TDSGFADSLV VTAVFVAIVV PAQTVLGLLA ASLLARRLPG TGLFRTLYVL PWICAPLAIA 121 VMWRWILAPT DGAISTVLGH RIEWLTDPGL ALPVVSAVVV WTNVGYVSLF FLAGLMAIPQ 181 DIHNAARTDG ASAWQRFWRI TLPMLRPTMF FVLVTGIISA AQVFDTVYAL TGGGPQGSTD 241 LVAHRIYAEA FGAAAIGRAS VMAVVLFVIL VGATVVQHLY FRRRISYELT //