LOCUS       SIT99682.1               104 aa    PRT              BCT 25-MAY-2020
DEFINITION  Mycobacterium tuberculosis variant bovis AF2122/97 probable
            integrase (fragment) protein.
ACCESSION   LT708304-1094
PROTEIN_ID  SIT99682.1
SOURCE      Mycobacterium tuberculosis variant bovis AF2122/97
  ORGANISM  Mycobacterium tuberculosis variant bovis AF2122/97
            Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae;
            Mycobacterium; Mycobacterium tuberculosis complex.
REFERENCE   1
  AUTHORS   Malone K.M.
  JOURNAL   Submitted (06-DEC-2016) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine, University College
            Dublin, D4, Ireland
REFERENCE   2
  AUTHORS   Malone M K., Farrell D., Malone K.
  JOURNAL   Submitted (15-APR-2020) to the INSDC. School of Veterinary
            Medicine, Tuberculosis Molecular Microbiology Research Group,
            University College Dublin, Tuberculosis Molecular Microbiology
            Research Group, School of Veterinary Medicine,, University College
            Dublin, D4, Ireland
FEATURES             Qualifiers
     source          /organism="Mycobacterium tuberculosis variant bovis
                     AF2122/97"
                     /chromosome="Mycobacterium_bovis_AF212297"
                     /isolate="AF2122/97"
                     /mol_type="genomic DNA"
                     /isolation_source="Mycobacterium bovis subsp. bovis strain
                     AF2122/97. This strain is a fully virulent strain that was
                     isolated in 1997 in the UK from a cow suffering necrotic
                     lesions in lung and bronchomediastinal lymph nodes. The
                     strain was also reported to infect and persist in badgers
                     that are considered to be a significant source of bovine
                     infection."
                     /db_xref="taxon:233413"
     protein         /transl_table=11
                     /locus_tag="BQ2027_MB1083"
                     /note="Mb1083, -, len: 104 aa. Equivalent to Rv1054, len:
                     104 aa, from Mycobacterium tuberculosis strain H37Rv,
                     (100.0% identity in 104 aa overlap). Probable integrase
                     (fragment), similar to Rv2309c|MTCY3G12_25|Z79702
                     hypothetical protein (shows similarity to integrases) from
                     Mycobacterium tuberculosis (151 aa), FASTA scores: opt:
                     273, E(): 8.8e-13, (64.7% identity in 68 aa overlap); and
                     to L39071|MSGINT_1 integrase from Mycobacterium
                     paratuberculosis (191 aa), FASTA scores: opt: 105, E():
                     0.9, (31.8% identity in 85 aaoverlap). This ORF continues
                     in another frame as Rv1055|MTV017.08 but no error can be
                     found to account for frameshift. Length extended since
                     first submission (+36 aa). Mb1083 found to be expressed
                     during exponential growth in Sauton's minimal media by
                     RNA-sequencing."
                     /db_xref="GOA:A0A1R3XZC2"
                     /db_xref="InterPro:IPR011010"
                     /db_xref="InterPro:IPR014417"
                     /db_xref="UniProtKB/TrEMBL:A0A1R3XZC2"
BEGIN
        1 MTGKGIVEST TKTKRDRHVP VPEPVWRRLH AELPTDPNAL VFPGRKGGFL PLGEYRWAFD
       61 NAGDQVGIEG WYRTVWGTPR PRWRSAQALT SRSCNGSLDT QQRR
//