LOCUS SIT60465.1 1347 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Protein lev-9 protein.
ACCESSION BX284606-1436
PROTEIN_ID SIT60465.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="lev-9"
/locus_tag="CELE_T07H6.5"
/standard_name="T07H6.5b"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1N7SYU8"
/db_xref="InterPro:IPR000436"
/db_xref="InterPro:IPR007110"
/db_xref="InterPro:IPR008197"
/db_xref="InterPro:IPR035976"
/db_xref="InterPro:IPR036645"
/db_xref="UniProtKB/TrEMBL:A0A1N7SYU8"
/db_xref="WormBase:WBGene00002976"
intron_pos 61:1 (1/26)
intron_pos 122:1 (2/26)
intron_pos 165:0 (3/26)
intron_pos 190:1 (4/26)
intron_pos 248:1 (5/26)
intron_pos 334:2 (6/26)
intron_pos 388:1 (7/26)
intron_pos 423:1 (8/26)
intron_pos 484:1 (9/26)
intron_pos 537:1 (10/26)
intron_pos 589:1 (11/26)
intron_pos 621:0 (12/26)
intron_pos 655:1 (13/26)
intron_pos 721:1 (14/26)
intron_pos 774:1 (15/26)
intron_pos 817:0 (16/26)
intron_pos 841:1 (17/26)
intron_pos 890:0 (18/26)
intron_pos 922:1 (19/26)
intron_pos 998:1 (20/26)
intron_pos 1044:0 (21/26)
intron_pos 1072:0 (22/26)
intron_pos 1103:1 (23/26)
intron_pos 1163:1 (24/26)
intron_pos 1196:2 (25/26)
intron_pos 1281:1 (26/26)
BEGIN
1 MRFLLLLAIS ITYASALSCP EVTLSQRPKH CKKECIADED CKRNKRCMCD GECGLSCVNP
61 IAMCHPLPNI ENGFIRTAGD LRFGSNAEYG CNKGYILVGA SQRRCQANKE WSSSQPVCRL
121 QLKCGPPPEI PFAVHDGSSF SGEYDLDAEV AYNCIPGYHK FNAKGLSISK CLLNRKNVAQ
181 WFGPDLRCKA RACPDPGDIE NGLREGDTFE YPHHVKYSCN PGFLLVGSTS RQCSSNGEWT
241 NEPANCKATE CSRPSSPLHG KVVGSSLTYQ SVVTYSCDHG YRLVGQVQRI CLAEGIWGGN
301 EPRCEEIRCS VLPTLPNGYI EGSETSFGAV AVFRCLETMT HEGASKAKCM EDGQWSAPIP
361 RCLASCRVPH IQNGKIRDKS EGQLIASGSK VIVECNKQHE ANIDERLICS NSTWSHVPVC
421 SPLSCHNWPP RVPHARILFS KSSHGSIAKY ECNNGYHPNR NNQIIKCLYG EWTKDGPPMK
481 CLPSWCEHPS KTYGTLPGGQ ILLEGILGAY EFQSYIQKVE EGRAISFQCG KGNYLIGPPK
541 ATCVNGEWMP KVSPKCVSQT HPMIEGKILW DRKKRSLPGR AVREYVDDEL STHRQHSGKC
601 GIVSGKLERM IMQHSDNGVS VICREGYEFA SERVVGKSTC VNGKWKPEIA ECIPKSCRVP
661 IRLHVFFLKA GTSQILQSND VVEDGTVAQM ACLRGFHLSG NGVLECIKGD LREPLGHCVP
721 QECILSELIV GKYNTTAETI KNGEKVLLMC TGTNVTISCS KGSLNPLPSC HENESRFCIA
781 PQDTTPAIIY RYHGLRKTHI DRYQTAYPNG TIFQFKCNDK EEAGGIECVN GEWVSNLLPC
841 VTANITNWKT PTNDEMCPPL RLELNQKIFN VENYIPHHMH LFAHGTILNV GCLTTSNSAE
901 TVPIKCRRGK WGYKKKLNCS KTETICTLKM NINSHTVIYH TQKKETVVFN QNFESGSKLL
961 FRCANIGLEQ LHGKKELQCY NGVWSSPIPY CIPIQATGTS VPIKYSVTHG THAISSKGEL
1021 IVSRAANVKL ACLTEKVASD PIWKVTSTYR SYPTQWTKAK TGDYDDIDGF EISIASVQPF
1081 DSGMLHCVLP NGARNSIKLI VHEEKCLLPI GPTNLQVDLS SPTLFVGTVA QFSCPPGFSV
1141 EGSAVSTCLE DATWSHSAPR CVAAHCPAVF VNGTRMTVTV TSYRTGGVAH FKCHKGFTLI
1201 GEQNLHCTTQ GTWSHDFPYC NVVHCPPLLP PANGHFIGEP KEINTKGDIV LLGCLPNYML
1261 TGGDFSVCQA DGEWSEIKTK CDGYCRHPGQ PDHGATTTIA KDYYSIGEKI VFYCPSQNYK
1321 LSSDNVLVCI SPGQWSRRLP LCLPSNS
//