LOCUS SIT60464.1 2049 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-589
PROTEIN_ID SIT60464.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-2"
/locus_tag="CELE_T02C5.5"
/standard_name="T02C5.5i"
/note="Partially confirmed by transcript evidence"
/db_xref="GOA:A0A1N7SYT8"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR014873"
/db_xref="InterPro:IPR027359"
/db_xref="InterPro:IPR031649"
/db_xref="UniProtKB/TrEMBL:A0A1N7SYT8"
/db_xref="WormBase:WBGene00006742"
intron_pos 81:2 (1/27)
intron_pos 114:0 (2/27)
intron_pos 220:2 (3/27)
intron_pos 263:1 (4/27)
intron_pos 354:1 (5/27)
intron_pos 418:2 (6/27)
intron_pos 448:2 (7/27)
intron_pos 516:1 (8/27)
intron_pos 535:2 (9/27)
intron_pos 578:1 (10/27)
intron_pos 721:0 (11/27)
intron_pos 761:1 (12/27)
intron_pos 832:1 (13/27)
intron_pos 928:0 (14/27)
intron_pos 963:2 (15/27)
intron_pos 999:0 (16/27)
intron_pos 1260:0 (17/27)
intron_pos 1477:2 (18/27)
intron_pos 1581:1 (19/27)
intron_pos 1611:0 (20/27)
intron_pos 1682:0 (21/27)
intron_pos 1715:2 (22/27)
intron_pos 1745:0 (23/27)
intron_pos 1785:1 (24/27)
intron_pos 1882:1 (25/27)
intron_pos 1932:1 (26/27)
intron_pos 1994:0 (27/27)
BEGIN
1 MGNDGDGASG SKPNGSVSRL LPSLDRLQPW MIPIAASEII PSPIHPRKIS INDRLFEIRT
61 PRPGEMIKEA VQMAVWPALP RLAAEEARRE QKAESGTFVR KTTLSSNAPV KEKGPSSLFI
121 FAEDNIIRRN AKAIIEWGPF EYFILLTIIG NCVVLSMEQH LPKNDKKALS EWLERTEPYF
181 MGIFCLECVL KVIAFGFALH KGSYLRSGWN IMDFIVVVSG VVTMLPFSPA TQTANQPVDS
241 VDLRTLRAVR VLRPLKLVSG IPSLQVVLKS ILCAMAPLLQ IGLLVLFAII IFAIIGLEFY
301 SGAFHSACYN ERGEIENVSE RPMPCTNKTS PMGVYNCDVK GTTCLQKWIG PNYGITSFDN
361 IGFAMITVFQ CITMEGWTTV MYYTNDSLGS TYNWAYFIPL IVLGSFFMLN LVLGVLSGEF
421 AKERERVENR REFLKLRRQQ QIERELNGYL EWILTAEEVI LKEDRTTEEE KAAIMEARRR
481 AANKKLKQAS KQQSTETEED FEEDEDEMEE EYVDEAERKK RGCCHSVGKF IKQLRIQIRI
541 MVKTQIFYWS VITLVFLNTC CVASEHYGQP QWFTDFLKYA EFVFLGIFVV EMLLKLFAMG
601 SRTYFASKFN RFDCVVIVGS AAEVIWAEVY GGSFGISVMR ALRLLRIFKL TSYWVSLRNL
661 VRSLMNSMRS IISLLFLLFL FILIFALLGM QLFGGRFNFP TMHPYTHFDT FPVALITVFQ
721 ILTGEDWNEV MYLAIESQGG IYSGGWPYSI YFIVLVLFGN YTLLNVFLAI AVDNLANAQE
781 LTAAEEADEK ANEIEEESEE LDEQYQEGDH CTIDMEGKTA GDMCAVARAM DDLDEECEEE
841 ESPFGGPKPM VPYSSMFFLS PTNPFRVLIH SIVCTKYFEM MVMTVICLSS VSLAAEDPVD
901 EENPRNKVLQ YMDYCFTGVF ACEMLLKLID QGILLHPGSY CRDFWNILDG IVVTCALFAF
961 GFAGTEGSAG KNLNTIKSLR VLRVLRPLKT IKRIPKLKAV FDCVVNSLKN VFNILIVYFL
1021 FQFIFAVIAV QLFNGKFFFC TDKNRKFANT CHGQFFVYDN QNDPPRVEQR EWRLRPFNYD
1081 NTINAMLTLF VVTTGEGWPG IRQNSMDTTF EDQGPSPFFR VEVALFYVMF FIVFPFFFVN
1141 IFVALIIITF QEQGEAELSE GDLDKNQKQC IDFALNARPR SLFMPEDKNS TKYRIWRLVT
1201 SPPFEYFIMT MICCNTLILM MKYYNNPLFY EEILRLFNTA LTAVFTVESI LKILAFGVRN
1261 YFRDGWNRFD FVTVVGSITD ALVTEFGGHF VSLGFLRLFR AARLIRLLQQ GYTIRILLWT
1321 FVQSFKALPY VCLLIGMLFF IYAIVGMQVF GNIWLNAATE INRHNNFQSF FNAVILLFRC
1381 ATGEGWQDIM MAAVQGKDCA RAGSAEINFE KGQTCGSNVS YAYFTSFVFL SSFLMLNLFV
1441 AVIMDNFDYL TRDSSILGPH HLDEFIRVWA DYDPAATGRI HYSEMYEMLR IMAPPVGFGK
1501 KCPYRLAYKH LIRMNMPVAE DGTVHFTTTL FALIRESLSI KMRPVEEMDE ADEELRLTLK
1561 KIWPLKAKKN MVDLVVPPNH ELCFQKLTVG KIYAGLLILE NYRARKSGTE VGGQGLFGGG
1621 LRSLVAAAKA AESQHSSHTP QPPEETTPII PQHAQQFSAA PTMSAQGSLQ QMQGTSSGGG
1681 QRPYSLFNSF VDTIKSGKQD GDVTDVQYQS VDQQHEKMNS TGRRLSDMFS KIRRGTSADH
1741 NPHQTEHLLA QDNRSPSSPR YRSMARASPP SPAERYGHPP RYRTESPPSS RSEYQMSIRD
1801 PIIRRNRYNT MEHSRSSHDP QYHQDQQQQQ QPHHQQHSQH LQHSHHKTYQ NHNQYSRSPI
1861 YSDDSSVAES YRREREFRRY QDSTPQDVSE DDDPMPTAVR ARRLPLISTM PTHYESAYQP
1921 SSYNQHLNDS YGLGTGYQRD YHTSHSHSHH PTSQQQQHQP MYSTSPLISP RSSHSYYTPR
1981 SSQYYEIPSP SPDIYPSYRG SASPRRYPTS TVVVAPDREG SSARVIQAQP GSIPLSDSET
2041 EDDPRWAIV
//