LOCUS SIT60460.1 1325 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-3903
PROTEIN_ID SIT60460.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="F43B10.1"
/locus_tag="CELE_F43B10.1"
/standard_name="F43B10.1d"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1N7SYW5"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR011992"
/db_xref="InterPro:IPR018247"
/db_xref="InterPro:IPR041534"
/db_xref="UniProtKB/TrEMBL:A0A1N7SYW5"
/db_xref="WormBase:WBGene00018373"
intron_pos 789:0 (1/10)
intron_pos 806:2 (2/10)
intron_pos 907:2 (3/10)
intron_pos 940:0 (4/10)
intron_pos 996:2 (5/10)
intron_pos 1092:2 (6/10)
intron_pos 1126:1 (7/10)
intron_pos 1173:2 (8/10)
intron_pos 1286:2 (9/10)
intron_pos 1306:2 (10/10)
BEGIN
1 MYHLDDDYFA RFNQPSSSSV QFPSESLRYG GSGLATTTTF GAENDPQTTR FRSQSADNRR
61 SAFQHQPRTI SEDHIPEPWN QGPLRTAEVN FPSQQRRPAS TTPWSSHSEY HSSHNLSVPS
121 SFSEHLRERS PASGSALLDL LSRYPSAQHS VQNSPAVQAY IDRIHTDRAP PTRSYTYQSS
181 ESNFPLIEYS IRQEVPNGVR STTSVYQNVV PNGNGYPSQQ RVQTTFTSNG PVTSTFHREY
241 HNSTPHQYQH SSSLGGPPLP LPRESSLQQQ QQQAHPFENR SEFHRHPPPP PPPSSSSSHQ
301 FYNNGVPALA SSASSGGFRQ PVFHDTDQLD IIAQRLLDDN MSRSTSEWSK SFEQLQNRFQ
361 NLESDDLLSP SAFTTTGSMT LPRRGAQLPI SKSSSNYEMN SSLLGRAVER RAAEAPEQRK
421 SGALDNFWSQ TISSRPSSPT IQRIPTSLTA AERLQMLQEP IDTEKRFTQR VGSGQGVAAR
481 KAELMREPSV EYTEKPRTPL NPAFPSNSFL IPSFNELDNA VNELSRTVRG NTFGGTTFGS
541 VSPAPVVHND SLNRRVGGCG RFPTGEHAFS PPPIEVSKSP ALSLHRKLHS PSPTDEVSES
601 SSVYQIPTGL PHPKPKHNVK EQLHLAGIHT PGYQISRTMY RNGPNFPVPS TGSVASRITE
661 FEKRPGTPVV QLSTTTVKYN EHVPVAATAK AVPQTNGNMS PRSAVFRAKP VIHVDMGSTY
721 QHSSPTPPIR HIQVHSVQNQ NHQPLQNHQN HQSYLGKEQH NHYRPQYQQQ PIKQHDIATH
781 SIFDFKSNNV SAASATQIQA DVTPTKSAHP AELNVVSPPK RTASVPASRL NLNGTLDSNG
841 NYGRKSASQS DLNYSAELSV AAPTRHAIPE LDLTFDSYND EQYRPTPKPT QVISRPLPPK
901 PQAPKEPIYY PQGKPVPQLQ NDTALRRVCE VFRSVPNQKC TLENMPAVCE AAGLPMYWKM
961 PVFLAITNDE DRLATQVDFT SWWKAMTSVA HDEAARFVYT LTMGSRSYLQ PEDFYEMLMD
1021 VIHTHPGLAF YRDATEFHDK YCQVVMTRIF WNDAHSWSGR LTTERLRKGG VLQAIRNLQF
1081 DDDINKSLRY FSYEHFYVVY CKFWEIDSDH DLKISSTDLA QHAGGALVPM VVDRIFSGAV
1141 CTNPNRGQPV EDIGLAEFTQ FLLAEEDKTH PTSIEYWFRI LDLDGDGLVT LYDMELFHTQ
1201 VQRKLAAEGI DSMGFADVAC QLIDMLNVPG GVSAFRLSDL KKSSLRGRFI NTFVNWRKFF
1261 AQETNEGSES PRIEDEGGQE LTEWDRYCIE EYEAMMEDDQ ADAETISLNL EEDDGRSSLA
1321 YHDVL
//