LOCUS SIT60452.1 2002 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans EF-hand domain-containing protein protein.
ACCESSION BX284606-584
PROTEIN_ID SIT60452.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="unc-2"
/locus_tag="CELE_T02C5.5"
/standard_name="T02C5.5l"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1N7SYT1"
/db_xref="InterPro:IPR002048"
/db_xref="InterPro:IPR002077"
/db_xref="InterPro:IPR005821"
/db_xref="InterPro:IPR014873"
/db_xref="InterPro:IPR027359"
/db_xref="InterPro:IPR031649"
/db_xref="UniProtKB/TrEMBL:A0A1N7SYT1"
/db_xref="WormBase:WBGene00006742"
intron_pos 16:2 (1/28)
intron_pos 49:0 (2/28)
intron_pos 155:2 (3/28)
intron_pos 198:1 (4/28)
intron_pos 289:1 (5/28)
intron_pos 353:2 (6/28)
intron_pos 383:2 (7/28)
intron_pos 451:1 (8/28)
intron_pos 470:2 (9/28)
intron_pos 513:1 (10/28)
intron_pos 656:0 (11/28)
intron_pos 696:1 (12/28)
intron_pos 767:1 (13/28)
intron_pos 863:0 (14/28)
intron_pos 898:2 (15/28)
intron_pos 934:0 (16/28)
intron_pos 1195:0 (17/28)
intron_pos 1412:2 (18/28)
intron_pos 1516:1 (19/28)
intron_pos 1546:0 (20/28)
intron_pos 1617:0 (21/28)
intron_pos 1650:2 (22/28)
intron_pos 1680:0 (23/28)
intron_pos 1698:0 (24/28)
intron_pos 1738:1 (25/28)
intron_pos 1835:1 (26/28)
intron_pos 1885:1 (27/28)
intron_pos 1947:0 (28/28)
BEGIN
1 MTRMKEASRQ LPSPSQLAAE EARREQKAES GTFVRKTTLS SNAPVKEKGP SSLFIFAEDN
61 IIRRNAKAII EWGPFEYFIL LTIIGNCVVL SMEQHLPKND KKALSEWLER TEPYFMGIFC
121 LECVLKVIAF GFALHKGSYL RSGWNIMDFI VVVSGVVTML PFSPATQTAN QPVDSVDLRT
181 LRAVRVLRPL KLVSGIPSLQ VVLKSILCAM APLLQIGLLV LFAIIIFAII GLEFYSGAFH
241 SACYNERGEI ENVSERPMPC TNKTSPMGVY NCDVKGTTCL QKWIGPNYGI TSFDNIGFAM
301 ITVFQCITME GWTTVMYYTN DSLGSTYNWA YFIPLIVLGS FFMLNLVLGV LSGEFAKERE
361 RVENRREFLK LRRQQQIERE LNGYLEWILT AEEVILKEDR TTEEEKAAIM EARRRAANKK
421 LKQASKQQST ETEEDFEEDE DEMEEEYVDE AERKKRGCCH SVGKFIKQLR IQIRIMVKTQ
481 IFYWSVITLV FLNTCCVASE HYGQPQWFTD FLKYAEFVFL GIFVVEMLLK LFAMGSRTYF
541 ASKFNRFDCV VIVGSAAEVI WAEVYGGSFG ISVMRALRLL RIFKLTSYWV SLRNLVRSLM
601 NSMRSIISLL FLLFLFILIF ALLGMQLFGG RFNFPTMHPY THFDTFPVAL ITVFQILTGE
661 DWNEVMYLAI ESQGGIYSGG WPYSIYFIVL VLFGNYTLLN VFLAIAVDNL ANAQELTAAE
721 EADEKANEIE EESEELDEQY QEGDHCTIDM EGKTAGDMCA VARAMDDLDE ECEEEESPFG
781 GPKPMVPYSS MFFLSPTNPF RVLIHSIVCT KYFEMMVMTV ICLSSVSLAA EDPVDEENPR
841 NKVLQYMDYC FTGVFACEML LKLIDQGILL HPGSYCRDFW NILDGIVVTC ALFAFGFAGT
901 EGSAGKNLNT IKSLRVLRVL RPLKTIKRIP KLKAVFDCVV NSLKNVFNIL IVYFLFQFIF
961 AVIAVQLFNG KFFFCTDKNR KFANTCHGQF FVYDNQNDPP RVEQREWRLR PFNYDNTINA
1021 MLTLFVVTTG EGWPGIRQNS MDTTFEDQGP SPFFRVEVAL FYVMFFIVFP FFFVNIFVAL
1081 IIITFQEQGE AELSEGDLDK NQKQCIDFAL NARPRSLFMP EDKNSTKYRI WRLVTSPPFE
1141 YFIMTMICCN TLILMMKYYN NPLFYEEILR LFNTALTAVF TVESILKILA FGVRNYFRDG
1201 WNRFDFVTVV GSITDALVTE FGGHFVSLGF LRLFRAARLI RLLQQGYTIR ILLWTFVQSF
1261 KALPYVCLLI GMLFFIYAIV GMQVFGNIWL NAATEINRHN NFQSFFNAVI LLFRCATGEG
1321 WQDIMMAAVQ GKDCARAGSA EINFEKGQTC GSNVSYAYFT SFVFLSSFLM LNLFVAVIMD
1381 NFDYLTRDSS ILGPHHLDEF IRVWADYDPA ATGRIHYSEM YEMLRIMAPP VGFGKKCPYR
1441 LAYKHLIRMN MPVAEDGTVH FTTTLFALIR ESLSIKMRPV EEMDEADEEL RLTLKKIWPL
1501 KAKKNMVDLV VPPNHELCFQ KLTVGKIYAG LLILENYRAR KSGTEVGGQG LFGGGLRSLV
1561 AAAKAAESQH SSHTPQPPEE TTPIIPQHAQ QFSAAPTMSA QGSLQQMQGT SSGGGQRPYS
1621 LFNSFVDTIK SGKQDGDVTD VQYQSVDQQH EKMNSTGRRL SDMFSKIRRG TSADHNPHQN
1681 YSHRFGYSRN RGSRYDETEH LLAQDNRSPS SPRYRSMARA SPPSPAERYG HPPRYRTESP
1741 PSSRSEYQMS IRDPIIRRNR YNTMEHSRSS HDPQYHQDQQ QQQQPHHQQH SQHLQHSHHK
1801 TYQNHNQYSR SPIYSDDSSV AESYRREREF RRYQDSTPQD VSEDDDPMPT AVRARRLPLI
1861 STMPTHYESA YQPSSYNQHL NDSYGLGTGY QRDYHTSHSH SHHPTSQQQQ HQPMYSTSPL
1921 ISPRSSHSYY TPRSSQYYEI PSPSPDIYPS YRGSASPRRY PTSTVVVAPD REGSSARVIQ
1981 AQPGSIPLSD SETEDDPRWA IV
//