LOCUS SCN13875.1 978 aa PRT CON 06-FEB-2024 DEFINITION Caenorhabditis elegans DUF3402 domain-containing protein protein. ACCESSION BX284602-2548 PROTEIN_ID SCN13875.1 SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 15279421) AUTHORS WormBase. CONSRTM WormBase Consortium JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 2 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA. REFERENCE 3 (bases 1 to 15279421) AUTHORS Sulson J.E., Waterston R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282(5396), 2012-2018(1998). COMMENT Annotated features correspond to WormBase release WS292. Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites). Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature. FEATURES Qualifiers source /organism="Caenorhabditis elegans" /chromosome="II" /strain="Bristol N2" /mol_type="genomic DNA" /db_xref="taxon:6239" protein /transl_table=1 /gene="farl-11" /locus_tag="CELE_F10E7.8" /standard_name="F10E7.8b" /note="Confirmed by transcript evidence" /db_xref="InterPro:IPR012486" /db_xref="InterPro:IPR021819" /db_xref="InterPro:IPR040185" /db_xref="UniProtKB/TrEMBL:A0A1D3PCL0" /db_xref="WormBase:WBGene00017349" intron_pos 11:1 (1/8) intron_pos 71:0 (2/8) intron_pos 120:0 (3/8) intron_pos 170:0 (4/8) intron_pos 230:0 (5/8) intron_pos 722:0 (6/8) intron_pos 750:1 (7/8) intron_pos 904:1 (8/8) BEGIN 1 MGIRPNFAED VPVYGDKERR SADDEHVEYS ESSLAARRSA NVLKLKQLKE AQPMITPAYG 61 GFIHHESSDN VAAIDKDLDF EYGDGDAGIR EMAELYSYSE IEEFGINISN WKEYIEESYD 121 GKHEQFPSTF EEFSAVQKNY VIQDLCSRME SADLEVRLKS ARIILFLLQG SATDFGCLEN 181 EEIEYQYDQK LLMNVPIRKT KEMDPEGPSM VYHRAIENSF ICYKNGVYQA LCTLLMTEIK 241 EPFESPPNDG RISKASSRSS RNASLADLSD SEKWRTRQLP TMVDNEMLRV ILAGLYHMIV 301 QILDERSGRE DETDSDLETR KAFREEVQEP IENGNEPLLI VLFDMLHPFY IGTAPHFPIK 361 KIVLLIWKIL LLTLGGWEEL TVRKREKRMT AGLDIMEDTI TVAASQAAFI AKDQEHVRNM 421 AHRAGSFARG GMMARQMAYN DDSKDEDAYS EASSEDSTIA SKKEDSPGAS SSTPPSIPDT 481 ASNFRQGSGE QTPRVGSPVF PVIQKKTLPW RSKTNAQDIE DFIQKGRFKY FNYDFDPGDD 541 TTLFGLPPSF CGAVKILRNN MYTSLTELQV KKDEELNRYL FSMKEDIPET KTETLYRKIL 601 PNLSQYICAL VKVMVSSVPS TKARHEGLNV LIDCLTPEME ASDILSNSIS LDNSTSSPLE 661 EGFRLAIDIN RHKEIIVKSL SAILLLLVKH FKLNHIYQFE YICQQIVYVN GIPLILKFLD 721 QNTNKLIQSR HEIYAYNYPQ CLYHYVRNNE EWPILTQDNI EEPRPPGAGP YFMWRNVFFA 781 INLIRLLNKL VKAKNDRVKM LMVFKSAPVL KRLFKVRVSV LQLYVLKAIK MQSRYLGRQW 841 RKSNMDIISA IYSRVRHRMT DDWAFASDIK RKCDYQKEDS LIKASIERFH SRRYSALYPQ 901 FAIEVNDAPM PGDDYLNRVD MRDFEPVDTC AHSVLGANLK LGRHFKKDYE KWLEQEVFNA 961 SIDWDKLLIE TRGVEDLM //