LOCUS       SBV53400.1               494 aa    PRT              CON 06-FEB-2024
DEFINITION  Caenorhabditis elegans Inward rectifier potassium channel
            irk-1 protein.
ACCESSION   BX284606-146
PROTEIN_ID  SBV53400.1
SOURCE      Caenorhabditis elegans
  ORGANISM  Caenorhabditis elegans
            Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
            Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
            Caenorhabditis.
REFERENCE   1  (bases 1 to 17718942)
  AUTHORS   WormBase.
  CONSRTM   WormBase Consortium
  JOURNAL   Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
            Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
            help@wormbase.org
REFERENCE   2  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  JOURNAL   Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
            Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
            Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE   3  (bases 1 to 17718942)
  AUTHORS   Sulson J.E., Waterston R.
  CONSRTM   Caenorhabditis elegans Sequencing Consortium
  TITLE     Genome sequence of the nematode C. elegans: a platform for
            investigating biology
  JOURNAL   Science 282(5396), 2012-2018(1998).
COMMENT     Annotated features correspond to WormBase release WS292.
            Protein-coding gene structures below are the result of integration
            and manual review of the following types of data: ab initio
            predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
            alignments to published proteins and cDNAs; genome sequence
            conservation with other nematodes (e.g. to C. briggsae using WABA:
            Genome Res. 2000. 10:1115-1125); sequence features (such as
            trans-splice and polyA sites).
            Sources of data: large-scale EST projects of Yuji Kohara
            (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
            cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
            sequencing project (Genome Res. 2009. 19:2334-2342); IST library
            (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
            Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
            Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
            sequencing data (454 read clusters - Makedonka Mitreva,
            unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
            Numerous data sets from the modENCODE project (Science. 2010.
            330:1775-87); Individual C. elegans Nucleotide Database
            submissions; Personal communications with C. elegans researchers;
            Non-Coding gene structures below are derived using the following
            methods and data: ab initio prediction of tRNAs by tRNAscan-SE
            (Nucl. Acids. Res., 25, 955-964); integration and appraisal of
            miRNAs from miRBase (http://www.mirbase.org); integration and
            appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
            2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
            manual curation of novel published ncRNAs from the literature.
FEATURES             Qualifiers
     source          /organism="Caenorhabditis elegans"
                     /chromosome="X"
                     /strain="Bristol N2"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:6239"
     protein         /transl_table=1
                     /gene="irk-2"
                     /locus_tag="CELE_M02A10.2"
                     /standard_name="M02A10.2f"
                     /note="Confirmed by transcript evidence"
                     /db_xref="GOA:A0A1C3NSR3"
                     /db_xref="InterPro:IPR013518"
                     /db_xref="InterPro:IPR014756"
                     /db_xref="InterPro:IPR016449"
                     /db_xref="InterPro:IPR040445"
                     /db_xref="InterPro:IPR041647"
                     /db_xref="UniProtKB/TrEMBL:A0A1C3NSR3"
                     /db_xref="WormBase:WBGene00002150"
     intron_pos      31:1 (1/15)
     intron_pos      70:0 (2/15)
     intron_pos      88:2 (3/15)
     intron_pos      134:0 (4/15)
     intron_pos      168:2 (5/15)
     intron_pos      193:0 (6/15)
     intron_pos      220:0 (7/15)
     intron_pos      251:0 (8/15)
     intron_pos      273:2 (9/15)
     intron_pos      316:1 (10/15)
     intron_pos      345:2 (11/15)
     intron_pos      387:0 (12/15)
     intron_pos      426:0 (13/15)
     intron_pos      447:0 (14/15)
     intron_pos      484:1 (15/15)
BEGIN
        1 MPQNFVERVE RLALANGRLP GRSLLLDREQ AQRMLDIEEP LVKNKKYPFF KTPRLGGSRR
       61 IRNRLVQKQG LCNISLKNVP KQRRKYFSDI FTTVIEMKWR WCLLYFSLSF MISWSFFATV
      121 YFLIAKQHGD IEQIANATWT PCIVNVHNEL NAFLFSFTTQ TTIGYGFRYP TDACPLTIVT
      181 MCFQFMWGVM TQTLMAGIIF SKLARPIKRA ATLIFSKNAV ICLRDGKLCL LFRVGDMRKS
      241 SLAEAHVRLQ MIKRCVTYEG ELLPFHQFDM DVGYDQGLDR VFVIWPITIC HEIDERSPLW
      301 EIGADDLKSA KFEIIAILEG VVESVGSTTQ ARTSYLPSEI LWGHRFEKLV HYKKENGQYN
      361 IDFGKFHNVY SVNTPTCSAA EIERLRSEGI FNESEYQMYP PSDNKLNLLD NDEMSPVRDS
      421 IDLNQIQILR RDSDEDPDAG EESMELVDLG IHHKCSIRSQ SPIINSTSHL LQPMHKNSCS
      481 VRRGSSTLNV SLHG
//