LOCUS SBV53384.1 1525 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apical junction molecule protein.
ACCESSION BX284606-2109
PROTEIN_ID SBV53384.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ajm-1"
/locus_tag="CELE_C25A11.4"
/standard_name="C25A11.4m"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1C3NSL9"
/db_xref="InterPro:IPR002893"
/db_xref="InterPro:IPR038825"
/db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9"
/db_xref="WormBase:WBGene00000100"
intron_pos 1:2 (1/21)
intron_pos 41:2 (2/21)
intron_pos 144:1 (3/21)
intron_pos 184:0 (4/21)
intron_pos 242:0 (5/21)
intron_pos 265:0 (6/21)
intron_pos 303:0 (7/21)
intron_pos 609:2 (8/21)
intron_pos 670:2 (9/21)
intron_pos 887:2 (10/21)
intron_pos 911:1 (11/21)
intron_pos 969:0 (12/21)
intron_pos 1010:0 (13/21)
intron_pos 1049:2 (14/21)
intron_pos 1190:0 (15/21)
intron_pos 1243:1 (16/21)
intron_pos 1278:2 (17/21)
intron_pos 1318:2 (18/21)
intron_pos 1358:2 (19/21)
intron_pos 1423:0 (20/21)
intron_pos 1468:2 (21/21)
BEGIN
1 MDDNASLRSA SITFDANRDE QDLLNESFAS NPTDETVLMQ KTKDEMDATS ERPRSPLDLP
61 PPPASVVLHP SAPPPPPPPL SSTEVVGNTT TTTTTHYAPK TWNDPSITTA PKIPVSLLSG
121 AQPLPSVLTQ RTTTSSYSAP NYSASSMSGV PSDVAPPPPL PIPNQSSSSA ASYQHHHASS
181 ISKSISSSRE DLLSEHATSR STVREIPVHR APSTAPSHSS VFEYHMMPTT TSTYHHVETP
241 SDEYYRREVM TRTIITRSTE ALSQTPLGRP ASPLDRYLPY PTTTTTTSGD GRTREEKTVD
301 YKVTYHRDIE EQERRIREDQ ARRQQEEQDR RDREDNARRI LAQREHQEME RLREQQNLSE
361 RALAERERAD KERLQQERLL RQQREKKRRE EWDRLESIRL AEEEAELARR RALEKERIDR
421 EKAEEERKTM ERLERERARL ERERLEEERR QKEKAETERI ERERREHERI EIERIERIKR
481 ERIERERRER EEKKAEEDRL LRERLELERI ERERRELEAR ERQELELQRR EAEDRERQRL
541 EDEAREMRRR EEERREAELV ADVHRQAEER ERLRKRQERE EAERLERIRL EQQKIDMERI
601 DAERRERERK EEERREFELI EAARRKKEAR DRDRLDEMER ERVREEEERR EKERREQERR
661 IAAEKERKRR QEEEEEIARL NELQRAAAAR QAQRNAELDR QRQRDELDRK AQELSEREMR
721 EKERRDRERA NEEAQLADLL ERERHNQLIR ENERREAVER ANNRRLEDRR SRDKLDHIVR
781 ERSEKEQFEL EKRRLLAEKE AMNRKKNHLL SSETLAKLTQ PMYYTTREPE VTTKVERQVI
841 ERIDRNVWVE DVPYAPSQSA MGYLDNDENN RDRLYNPNDL NRNGSSRSRY QRAKNEKARR
901 DFYHSSQDSA DPVTERFRKS TDDLTTRSRP EYRGPLLQKF HDSEFRTTAL NETDGLPYRR
961 MGPSPYEQPF AKLLEETERR YAHYNSRASN PSIYQSSRYY YPERHGQPQH TDNTRAESVV
1021 AYERESRRES PADQAHIRSR SADYLMDRRI REETEVPENQ LQKTRVEPHD QSPRESRISE
1081 YEMRFRKSTE KLTVPDWYRE NRPQGQTAQT STYRYGNGVE PMSTTTTTTT VINGTSSHQQ
1141 APPPVPPQPI GNIGLPRGMF DRYKDDIEEL RRSRSSLHQT GQQETSNRQG STLSVGGIVD
1201 QGHALPGYTV SEVPNAWNLH TSRTSRVVEV ADTFVGTSSH EYGNFTNRYG GRVTIEEVLD
1261 SIFQKVTPTN QRLNFDRSYP QADELFQGNV DGPGIYTNNY SVMRQVLKSP ERAEHILQNE
1321 ELFVRCTECH RTRELSAARL FFVSCKHCYT YYCSRECRHN NWPNHSGRCS FARINTLCKD
1381 VIMKVREDEQ AQAFMSKVAR DGFSVSGRGS VNIRLSSPQL AQAYVSNGWR ALSAYPNDQL
1441 LYYYTVKALI AERKEPSLIA LCNRYEPREK FILSVSIIAD IEHCPETPPP ETRELSAVQF
1501 SSPRSRYEAI QNQNAPYFSE FAHNV
//