LOCUS SBV53380.1 1905 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans Apical junction molecule protein.
ACCESSION BX284606-2104
PROTEIN_ID SBV53380.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="ajm-1"
/locus_tag="CELE_C25A11.4"
/standard_name="C25A11.4f"
/note="Confirmed by transcript evidence"
/db_xref="GOA:A0A1C3NSL9"
/db_xref="InterPro:IPR002893"
/db_xref="InterPro:IPR038825"
/db_xref="UniProtKB/Swiss-Prot:A0A1C3NSL9"
/db_xref="WormBase:WBGene00000100"
intron_pos 35:0 (1/28)
intron_pos 88:0 (2/28)
intron_pos 124:2 (3/28)
intron_pos 153:0 (4/28)
intron_pos 206:0 (5/28)
intron_pos 262:0 (6/28)
intron_pos 358:0 (7/28)
intron_pos 381:2 (8/28)
intron_pos 421:2 (9/28)
intron_pos 524:1 (10/28)
intron_pos 564:0 (11/28)
intron_pos 622:0 (12/28)
intron_pos 645:0 (13/28)
intron_pos 683:0 (14/28)
intron_pos 989:2 (15/28)
intron_pos 1050:2 (16/28)
intron_pos 1267:2 (17/28)
intron_pos 1291:1 (18/28)
intron_pos 1349:0 (19/28)
intron_pos 1390:0 (20/28)
intron_pos 1429:2 (21/28)
intron_pos 1570:0 (22/28)
intron_pos 1623:1 (23/28)
intron_pos 1658:2 (24/28)
intron_pos 1698:2 (25/28)
intron_pos 1738:2 (26/28)
intron_pos 1803:0 (27/28)
intron_pos 1848:2 (28/28)
BEGIN
1 MDIENLQSSN NRSQKSRPPD GFNAILQTAF SAILAFVLSL RIIVFATARK RLTTTAANPD
61 IQVEEASSSS SDTSSDTEIV EEGVFIQRQG EPTMSEKKPA QGMPSVMSLL QTDEILSSCS
121 DDEPTTSGLI PLPSLIQSNM SVLPNFLHTI NEEESDEIRS LTGSSLASPR TVVDRRLSNI
181 SLLSPTPDED FGLEQQEQQP ENSEEVRGRE SRTSLEEERI VVGEPRTTRQ IEITQSASED
241 DRLDLLKELA KIGKSNTSTS QMSTTTPEKP EEIIDATGTS DTAEKIEVVI SKEEPAEQKN
301 EVEEPDYAQV PAESEDDAAQ ELAPTDSAIQ VVHVLEAPQK AELVTIPLAH SEAEDHKLAD
361 ADRDQEEELV FNEERRKTVT MDDNASLRSA SITFDANRDE QDLLNESFAS NPTDETVLMQ
421 KTKDEMDATS ERPRSPLDLP PPPASVVLHP SAPPPPPPPL SSTEVVGNTT TTTTTHYAPK
481 TWNDPSITTA PKIPVSLLSG AQPLPSVLTQ RTTTSSYSAP NYSASSMSGV PSDVAPPPPL
541 PIPNQSSSSA ASYQHHHASS ISKSISSSRE DLLSEHATSR STVREIPVHR APSTAPSHSS
601 VFEYHMMPTT TSTYHHVETP SDEYYRREVM TRTIITRSTE ALSQTPLGRP ASPLDRYLPY
661 PTTTTTTSGD GRTREEKTVD YKVTYHRDIE EQERRIREDQ ARRQQEEQDR RDREDNARRI
721 LAQREHQEME RLREQQNLSE RALAERERAD KERLQQERLL RQQREKKRRE EWDRLESIRL
781 AEEEAELARR RALEKERIDR EKAEEERKTM ERLERERARL ERERLEEERR QKEKAETERI
841 ERERREHERI EIERIERIKR ERIERERRER EEKKAEEDRL LRERLELERI ERERRELEAR
901 ERQELELQRR EAEDRERQRL EDEAREMRRR EEERREAELV ADVHRQAEER ERLRKRQERE
961 EAERLERIRL EQQKIDMERI DAERRERERK EEERREFELI EAARRKKEAR DRDRLDEMER
1021 ERVREEEERR EKERREQERR IAAEKERKRR QEEEEEIARL NELQRAAAAR QAQRNAELDR
1081 QRQRDELDRK AQELSEREMR EKERRDRERA NEEAQLADLL ERERHNQLIR ENERREAVER
1141 ANNRRLEDRR SRDKLDHIVR ERSEKEQFEL EKRRLLAEKE AMNRKKNHLL SSETLAKLTQ
1201 PMYYTTREPE VTTKVERQVI ERIDRNVWVE DVPYAPSQSA MGYLDNDENN RDRLYNPNDL
1261 NRNGSSRSRY QRAKNEKARR DFYHSSQDSA DPVTERFRKS TDDLTTRSRP EYRGPLLQKF
1321 HDSEFRTTAL NETDGLPYRR MGPSPYEQPF AKLLEETERR YAHYNSRASN PSIYQSSRYY
1381 YPERHGQPQH TDNTRAESVV AYERESRRES PADQAHIRSR SADYLMDRRI REETEVPENQ
1441 LQKTRVEPHD QSPRESRISE YEMRFRKSTE KLTVPDWYRE NRPQGQTAQT STYRYGNGVE
1501 PMSTTTTTTT VINGTSSHQQ APPPVPPQPI GNIGLPRGMF DRYKDDIEEL RRSRSSLHQT
1561 GQQETSNRQG STLSVGGIVD QGHALPGYTV SEVPNAWNLH TSRTSRVVEV ADTFVGTSSH
1621 EYGNFTNRYG GRVTIEEVLD SIFQKVTPTN QRLNFDRSYP QADELFQGNV DGPGIYTNNY
1681 SVMRQVLKSP ERAEHILQNE ELFVRCTECH RTRELSAARL FFVSCKHCYT YYCSRECRHN
1741 NWPNHSGRCS FARINTLCKD VIMKVREDEQ AQAFMSKVAR DGFSVSGRGS VNIRLSSPQL
1801 AQAYVSNGWR ALSAYPNDQL LYYYTVKALI AERKEPSLIA LCNRYEPREK FILSVSIIAD
1861 IEHCPETPPP ETRELSAVQF SSPRSRYEAI QNQNAPYFSE FAHNV
//