LOCUS SAP35627.1 1598 aa PRT CON 06-FEB-2024
DEFINITION Caenorhabditis elegans AT hook Transcription Factor family protein.
ACCESSION BX284606-167
PROTEIN_ID SAP35627.1
SOURCE Caenorhabditis elegans
ORGANISM Caenorhabditis elegans
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
Caenorhabditis.
REFERENCE 1 (bases 1 to 17718942)
AUTHORS WormBase.
CONSRTM WormBase Consortium
JOURNAL Submitted (04-FEB-2024) to the INSDC. WormBase Group, European
Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email:
help@wormbase.org
REFERENCE 2 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
JOURNAL Submitted (03-MAR-2003) to the INSDC. Nematode Sequencing Project:
Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome
Institute at Washington University, St. Louis, MO 63110, USA.
REFERENCE 3 (bases 1 to 17718942)
AUTHORS Sulson J.E., Waterston R.
CONSRTM Caenorhabditis elegans Sequencing Consortium
TITLE Genome sequence of the nematode C. elegans: a platform for
investigating biology
JOURNAL Science 282(5396), 2012-2018(1998).
COMMENT Annotated features correspond to WormBase release WS292.
Protein-coding gene structures below are the result of integration
and manual review of the following types of data: ab initio
predictions by Genefinder (P. Green and L. Hillier, pers. comm.);
alignments to published proteins and cDNAs; genome sequence
conservation with other nematodes (e.g. to C. briggsae using WABA:
Genome Res. 2000. 10:1115-1125); sequence features (such as
trans-splice and polyA sites).
Sources of data: large-scale EST projects of Yuji Kohara
(http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome
cloning project (http://worfdb.dfci.harvard.edu); RST large-scale
sequencing project (Genome Res. 2009. 19:2334-2342); IST library
(Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010
Unpublished); UTRome EST data submission (UTRome v1 Mangone M.
Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep
sequencing data (454 read clusters - Makedonka Mitreva,
unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66);
Numerous data sets from the modENCODE project (Science. 2010.
330:1775-87); Individual C. elegans Nucleotide Database
submissions; Personal communications with C. elegans researchers;
Non-Coding gene structures below are derived using the following
methods and data: ab initio prediction of tRNAs by tRNAscan-SE
(Nucl. Acids. Res., 25, 955-964); integration and appraisal of
miRNAs from miRBase (http://www.mirbase.org); integration and
appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell.
2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87);
manual curation of novel published ncRNAs from the literature.
FEATURES Qualifiers
source /organism="Caenorhabditis elegans"
/chromosome="X"
/strain="Bristol N2"
/mol_type="genomic DNA"
/db_xref="taxon:6239"
protein /transl_table=1
/gene="attf-5"
/locus_tag="CELE_T04G9.1"
/standard_name="T04G9.1b"
/note="Product from WormBase gene class attf"
/note="Confirmed by transcript evidence"
/db_xref="UniProtKB/TrEMBL:A0A168HBV3"
/db_xref="WormBase:WBGene00020214"
intron_pos 2:1 (1/12)
intron_pos 41:1 (2/12)
intron_pos 232:0 (3/12)
intron_pos 263:0 (4/12)
intron_pos 300:0 (5/12)
intron_pos 413:1 (6/12)
intron_pos 476:0 (7/12)
intron_pos 553:2 (8/12)
intron_pos 588:1 (9/12)
intron_pos 631:0 (10/12)
intron_pos 771:0 (11/12)
intron_pos 1577:1 (12/12)
BEGIN
1 MNADDEILRR EFGQPGRSMA SVFPYGGQPV HGVSLAHHFT SRILEPPVPL NGCIRATPIL
61 NQRFGPHYNR RFTQPNGAPY PLRPHSDTRN AHRVYPIPVE PPQRVHSIPP VYHRQKRSYA
121 SSVQQQKPPP VPIKQQVPVP SVPVIESIEQ IPLPRPQREP LIPESNPAAW QDVHSKREEK
181 ITNQLMAKSM ELDEFKKKFP DGTSIKEILT SGWYKDKLTG RLIQGKDPNM NETPSEQPSD
241 KQVTETDLDR AMRLVNCRSH WKNSRGHQPI RPAQPNIHPM SQNYSGPRNA HQHNLLPVKI
301 QQIQSHFVQN NLPSPARGAQ VSNALPSTSS SESSKLTDDI KQEQAMISKS SLEHPRQQST
361 REFLMQNQMG QKARSLWNQK TSGHFSEEPT PRHPVTRVSK YAMAEFTRHT PTGTRSATPN
421 ILRKNRNTDG CPSPMGLIDH ALFGSSMPPT VQSLNKLTGA RSTPDTPKQL KPEEPASETP
481 RKRQRKQILV SDHHYQSSHL YSLLQDDPVK HEPPSEKEEE QSRSSSNIVH SASQENTKFD
541 EDIVKVEAPE HNHTPPPVKK TRGRPRKDRS QEPTAVPKHM QRMRKPKKTK LNPENDEKAE
601 EERKALLQAL PTNLLNAIQA QKAMDREQDK QPRKYTRRTR TPKKLATENQ PLNAVTASLQ
661 FLQSITNIDP NVLFSGLNSE ILNDEAVETV GEEKLDESST LLPTATVVAT SGNPLTLDFD
721 NPSKIVVAPI WTDDTGPLMP ISMYRTDKKI ERKLMLDPVP KPVELMSNGT HPALSISSSS
781 LPNQSPDSIS IPTKMFSFVN AEDLLVPSAP CQFETTSIPM IPVHKETKPL ETRTCDSIKR
841 VRFSLDCSSK NSISTKERNL LTLKLMRKYQ LKFAKFNNVL FGKPKPRQRE GSISKTKDMH
901 TIRKINEHFD SLVINCVTAH FDEQPDAITS HQHNSIVTEF PIDWESTDTG CRWFPWHERI
961 VNNCAKDAAS DMVDSKINEI NSVIAYVDPM INGVTDLDVK EELSDLAFLI RTMYDNLDSK
1021 LQNHVRYGQV SLPKTFELKL KSIEQRLGQW TSVKEKFRSK NVDASISKWK VAMNNYIAAT
1081 MDREMKKQCL MDSYLKLKKS IQCFDAIVDI TMFASRLQVL YYHACRVYRS PLNLLEVQNI
1141 MRSVEDTEYL LLLAEVKVKL FEEIDVNPRV REQLRPKIDL IDLYMAADSM NVAKGRLRRL
1201 LRLNTDDGSI KACENDLCWK VDKFKDKCKD CDIPEIISLL PSKSWPQVII EEESARATGE
1261 YPERTNLFLE TEDFDFDYSL ELPVRLFANS TLGGTLSQMC ISLPQLTSIV DEKLRERAEK
1321 EKEEPKNIIQ SVIPLYRQHS KFYEKRCQIL IEARKQANMR KAEHSTHFNS NDQKLVNSIQ
1381 RDVKMYGSVV SGDQLLDYKP GRDDEKQLDV EIQNKIRLFR EQKRAEALER DRLTNLNRLG
1441 RQTETTEIKR KKAPCEKTES TFENGEIDYD NIHHGIRIIE SESEESSDSD SDSDENVEQE
1501 IIDGQVISMS QKDCQKLLEQ HRIACDRIRE PNNFLRDQNI MRNSERIRQS DWEYEYMLDQ
1561 LEYLENFEDD EIDVEEDKKF KHNVSSVDEE PVEKRRKS
//