LOCUS RID72315.1 1279 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4521
PROTEIN_ID RID72315.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C04213"
/db_xref="Phytozome:Brara.C04213"
intron_pos 38:0 (1/25)
intron_pos 87:0 (2/25)
intron_pos 138:0 (3/25)
intron_pos 222:2 (4/25)
intron_pos 281:1 (5/25)
intron_pos 323:0 (6/25)
intron_pos 335:1 (7/25)
intron_pos 366:0 (8/25)
intron_pos 404:0 (9/25)
intron_pos 442:0 (10/25)
intron_pos 470:0 (11/25)
intron_pos 538:1 (12/25)
intron_pos 575:0 (13/25)
intron_pos 608:0 (14/25)
intron_pos 646:0 (15/25)
intron_pos 685:0 (16/25)
intron_pos 712:0 (17/25)
intron_pos 736:0 (18/25)
intron_pos 767:1 (19/25)
intron_pos 778:0 (20/25)
intron_pos 806:2 (21/25)
intron_pos 830:2 (22/25)
intron_pos 906:2 (23/25)
intron_pos 955:0 (24/25)
intron_pos 1175:0 (25/25)
BEGIN
1 MEAAECVKVA VNIRPLITPE LLNGCTDCIT VVPKEPQVHI GSHTFTYDFV FGNAGLPCLE
61 IYDHCCSPLV DALFKGYNAT VLAYGQTGSG KTYTMGTNYS GDGTNCGIIP KVMEDIFKRV
121 GTTKDSTELL IRVSFIEIFK EEVFDLLDSN SPALLKNDGA VQAKHVALSR APIQIRETAG
181 GGITLAGVTE AEVKTKEEMG SFLARGSLAR ATGSTNMNSQ SSRSHAIFTI TLEQKKISSC
241 SSTMTEDAGE DILCAKLHLV DLAGSERAKR TGADGMRLKE GIHINKGLLA LGNVISALGD
301 EKKRKEGGHV PYRDSKLTRL LQDSLGGNSK TVMIACVSPA DTNAEETLNT LKYANRARNI
361 QNKAVINRDP AAAQMQRMRS QIEQLQTELL FYRGDSGGFD ELQILKHKVA LLETSNRELQ
421 NELQERRVAC EHFSKRAYDA QVEKDKLIMK IESVRNGKSL DEIESCQDED VGLINKYVSK
481 IQELEGELLH VRSLKKVSNY KYSESIDSPD DGPRSSNVLF PSSNESSDCE DKVIDVAVCA
541 DEVEFQEKEL EHCSLQEKLD MELKELDKRL EEKEAEMKRY SSGGTSVLKQ HYEKKVHELE
601 QEKRALQREI EGLRQNLASI PSAPGDGAQK LKESYLQKLN TLETQVSELK KKQDAQAQLL
661 RQKQKSDDAA RKLQDEIHRI KSQKVQLQQK IKQESEQFRA WKASREKEVM QLKKEGRRNE
721 YEMHKLMALN QKQKLVLQRK TEEASQATKR LKELLENRKA SSRETLSGAS ANGPGTQALM
781 QAIEHEIEVT VRVHEVRSEY ERQMEERARM AKEVARLREE TELLKNAKIS VDDDTMSPGA
841 RNSRIFALEN MLATSSNTLV SMASQLSEAE ERERVFGGRG RWNQVRTLGD AKSIMNYLFN
901 LASTARCLAR DREADCREKD VLIRDLKEKI VKFSSFVRYL EIQKADLAHQ VKAQASELIK
961 RSAEENLNNE HSLKKQEARN SVIVHEDMDT SDSDDSDHER EDPDLDDEWK PEQESERESE
1021 QESVIKLNRK RNFKVGRRRS SVVPRRSYEE NLDSPSDEAV KPTSTSDVCC TCSKSSSCKT
1081 MKCQCRATKG SCGPSCGCSS VKCSNRNADG KQNNSTSILE HSESSQEEQQ QVLASRGALL
1141 LQNALADKPV EETNNDGEGT RTRRKPLSDI GNTTGKTNVP KPMKRRKWRK PLLQLVVDPP
1201 PATTTPTSSQ EPSDSGEANN TKLKLPRSMT SKGSNMLRER NADQGGGESV GNGGFVQSSS
1261 GGASGSTTSD EKENHTRRI
//