LOCUS RID71845.1 1121 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-4051
PROTEIN_ID RID71845.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03764"
/db_xref="Phytozome:Brara.C03764"
intron_pos 92:0 (1/21)
intron_pos 126:0 (2/21)
intron_pos 174:0 (3/21)
intron_pos 224:1 (4/21)
intron_pos 233:2 (5/21)
intron_pos 289:0 (6/21)
intron_pos 310:1 (7/21)
intron_pos 315:0 (8/21)
intron_pos 343:1 (9/21)
intron_pos 378:0 (10/21)
intron_pos 424:1 (11/21)
intron_pos 464:0 (12/21)
intron_pos 515:0 (13/21)
intron_pos 531:0 (14/21)
intron_pos 557:0 (15/21)
intron_pos 610:0 (16/21)
intron_pos 679:0 (17/21)
intron_pos 747:2 (18/21)
intron_pos 793:0 (19/21)
intron_pos 836:1 (20/21)
intron_pos 885:1 (21/21)
BEGIN
1 MSQKVTPSMN SLKSLPADYR FDGSSVPRKG GFRNGISTSD TAAGDSEDSP YSGHVEQQSL
61 SEDMDTDAAT MPLPQSNERR WSDTSAYARK KILQSWIQLP NGNWELGKIL STSGEESVIS
121 LAEGKVIKVM SETLVPANPD ILDGVDDLMQ LSYLNEPSVL YNLNYRYNQD MIYTKAGPVL
181 VAVNPFKEVP LYGNSYIEAY RKRTNDSPHV YAIADTAIRE MIRDEVNQSI IISGESGAGK
241 TETAKIAMQY LAALGGGSGI EYEILKTNPI LEAFGNAKTL RNDNSSRFGK LIEIYFSETG
301 KISGAQVQTF LLEKSRVVQC AEGERSYHIF YQLCAGASPA LREKLNLKSA HEYKYLGQSN
361 CYSINGVDDA ERFHTVKEAL DIVHVSKEDQ ESVFAMLAAV LWLGNVSFTV IDNENHVEPV
421 ADESLSTVAK LIGCNINELK LSLSKRNMRV GKDTIVQKLT LPQAIDARDA LAKSIYSCLF
481 DWLVEQINKS LAVGKRRTGR SISILDIYGF ESFDRLQQHF NRHLFKLEQE EYIQDGIDWT
541 RVDFEDNQDC LSLFEKKPLG LLSLLDEEST FPNGTDLTLA NKLKQHLLSN SCFRGAREKL
601 FTVVHYAGEV TYETTGFLEK NRDLLHLDSI QLLSSCSCHL PQAFASSMLI QSEKPVVGPL
661 YKAGGADSQR LSVATKFKGQ LFQLMQRLGN TTPHFIRCIK PNNVQSPGLY EQGLVLQQLR
721 CCGVLEVVRI SRSGFPTRMS HQKFARRYGF LLVENIADKD PLSVSVAILH QFNILPEMYQ
781 VGYTKLFFRT GQIGVLEDTR NRTLHGILRV QSSFRGYQAR CHLKKLRMGI YTLQSFVRGE
841 KVRKEFAYLR KRHRAAATIQ SQVKSKIARK QYKGVTEASL VIQSAIRGWL VRRCSGDIGW
901 LKSGEVLVKA SVLSELQRRV LKSEAALREK EEENDILQQR LQQYENRWSE YETKMKSMEE
961 IWQKQMRSLQ SSLSIAKKSL AVEDSARNSD ASVNASDATD WDSSSNQFKG GGGRQQQQQR
1021 PMSAGLSVIG RLAEEFEQRA QVFGDDAKFL VEVKSGQVEA NLNPDRELRR LKQMFETWKK
1081 DYGGRLRETK MILSKLGSEE SGGSMEKVKR KWWGRRNSTR Y
//