LOCUS RID71614.1 975 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3820
PROTEIN_ID RID71614.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03541"
/db_xref="Phytozome:Brara.C03541"
intron_pos 32:1 (1/21)
intron_pos 91:2 (2/21)
intron_pos 115:2 (3/21)
intron_pos 138:2 (4/21)
intron_pos 162:2 (5/21)
intron_pos 186:2 (6/21)
intron_pos 210:2 (7/21)
intron_pos 234:2 (8/21)
intron_pos 258:2 (9/21)
intron_pos 267:1 (10/21)
intron_pos 290:2 (11/21)
intron_pos 312:2 (12/21)
intron_pos 333:2 (13/21)
intron_pos 349:2 (14/21)
intron_pos 363:1 (15/21)
intron_pos 488:0 (16/21)
intron_pos 553:1 (17/21)
intron_pos 598:1 (18/21)
intron_pos 638:0 (19/21)
intron_pos 787:2 (20/21)
intron_pos 838:0 (21/21)
BEGIN
1 MSLNRLIFPF FILVSLILSG FASSQTLPKE EVDALRAVAT ALKKSNWNFN VDPCDLTSSE
61 GGWRNLKATS KQFADTVTCN CSSTVCHVTS IVLKAQSLQG SLPKEFAGLP FLQEIDLSRN
121 YLNGSIPPEW GTLPLVNISL LANRIRGPIP KEIGNITTLK TLVLESNQIS GNLPPELGNL
181 QNIDKILLGT NYLTGDIPST FSKLTTLIDF RISDNQFTGT IPDFIKNWTK LFKLAIQASG
241 LVGPIPSTIG TLVKLTDLRI SDLNGPDLSF NKLSGPIPAT YSNLWNVDNI YFTSNMLNGE
301 VPRWAVDKGN NIDLTYNNFS KDRTTKECSL RNANMFSSTT TSPLAANNYS NVACLSYYIC
361 PKTFYGLHIN CGGDELTVNG TMYDSDTWEK PFHDGSRTGW VSSNTGNFLD DERDLKVTTL
421 WTNTSELKTA EPSLYTQARL SAISLTYLAL CLGNGSYTVK LHFAETMFGN NETYSSLGRR
481 FFDIYVQGKL VVKDFDIVSE AKGAGRVVVK SFQVMITNGM LEIRLFWAGK GTQAIPVRGS
541 YGVLISAVSV DPNFNVSGTS IGIIVGAAVA SLVFLVLLIV GILWCRGCFR PKSQMEKDFK
601 NLDFQISSFS LKQIKDATDN FYPANKIGEG GFGPVHKGKL TNGTLIAVKQ LSSKSNQGNR
661 EFLNEIGMIS ALEHPHLVKL YGCCVEGGQL LLIYEYLVNN SLARALFGPL ETQIRLDWPI
721 RQKICVGIAR GLAYLHEESR LKIVHRDIKA TNVLLDKELN PKISDFGLAK LDEQEDTHMS
781 TRVAGTYGYM APEYAMRGHL TDKADVYSFG VVALEIVHGR SNTSARSKAE TFYLLDWVHV
841 LREQNKLMEV VDPRLGTDYN REEAMKMIQI GILCTSLVPS DRPSMSTVVS MLEGHSTVDV
901 EELLENSFSR GNEKDEESVR AMKRHFAMIG GQEMTNVTKH TTNNDGPFTS SSSSSANAGD
961 LYPVKLDSAY WNSRV
//