LOCUS RID71375.1 987 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3581
PROTEIN_ID RID71375.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03316"
/db_xref="Phytozome:Brara.C03316"
intron_pos 218:0 (1/9)
intron_pos 481:1 (2/9)
intron_pos 657:2 (3/9)
intron_pos 705:0 (4/9)
intron_pos 741:0 (5/9)
intron_pos 812:0 (6/9)
intron_pos 849:0 (7/9)
intron_pos 914:0 (8/9)
intron_pos 972:1 (9/9)
BEGIN
1 MYTDSYTDTR SNMNRGSNAA DLEDRFQREL ESLLQQHRNH QTFGSQRDVV ADVHRSGSAP
61 PTVEGLLRAM DNQYLMNTNA DYIRDAANVG VELLSDDELR WHPAYLSYYY SNEHSNPRLP
121 PPLLSREDWR VAQRFHNGET VFDPVGEWRK KGENSNSNSN NNSSSSLFSV QPGVEQAESD
181 LMELRNAVAQ GRSQKTAVQR LDPGLGPRRK SFADILQEGL DRDAALRSQL SRPASCNTFR
241 DMNDPAVLTN FSPGGFDSPL AFHESLHSAG QNTPNAMLGS NMSSPVPRNR TPESHLVGRA
301 SASGLPPIGT RVGPVEKKNT FGSAIHTAAD VADTLSRLNM AEMNQVKDNL MQSQIQVELE
361 NQSDVMRYIP NGHKKALRQQ GIGMTESNDQ LFSSNYGGVM SGYGTSLGAS TVASHGQVNI
421 PKRASSSASL YSTSDRSRLG SLGLSDNIQN ANVNGMDFST AGGYLVNNKL NSLAEHYSPE
481 GSHLNGEGDI QNLNRLINQA AAELHSPIMD PHYSQYRHTA SATGAPSDHP LLRNNLGTSN
541 GDTANEYLAM LLAQQRHQLG NLSAANSRLF DNPPYDLGSM YLGNHLPSPS KNSRNLQNMR
601 MSQSAASMMK IPLGGLPGSS HVDIGSATEA SLLEGFKNNK TRSLELSEIV GHVIEFSMDQ
661 YGSRFIQQKL ETATDEEKNA IFPEILPYGR TLMTDVFGNY VIQKFFEHGT NKQRKELAEQ
721 VTGHVLALSL QMYGCRVIQK ALEVVDVEQQ AQMVRELDGS VLKCVHDQNG NHVIQKCIER
781 LPQECIQFII SSFYGKVLAL STHPYGCRVI QRVLEHIDDI ETQRIIMEEI MNSVCTLAQD
841 QYGNYVIQHI IQHGKPHERT EIINKLAGQI VTMSQQKFAS NVVEKCLTFG GPEERQVLVN
901 EMLGYTDENE PLQAMMKDPF GNYVVQKVLE TCDDQSLSLI ISRIKVHLNA LKRYTYGKHI
961 VARVEKLITT GERRIGLSSS LAANASP
//