LOCUS RID71182.1 1125 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3388
PROTEIN_ID RID71182.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03134"
/db_xref="Phytozome:Brara.C03134"
intron_pos 158:2 (1/4)
intron_pos 529:0 (2/4)
intron_pos 633:0 (3/4)
intron_pos 769:0 (4/4)
BEGIN
1 MALSLASSPS SSRTWLYDVF PSFSGVDVRV TFLSHLLKEF DKKLITAFKD NEIERSRSLD
61 PELKQAIKDS RIAVVIFSQN YASSSWCLNE LLEIVKCGQM VIPVFYRLDP SHVRKQTGEF
121 GKIFEETCKN QKAEVIIIQW RRALTDVANT LGYHSVNWGN EAAMIEEIAN DVLDKLLLTS
181 SKDSENFVGI EDHVAKLSVL LQLDAEEVRM VGLWGSSGIG KTTIARVLFQ RLSRHFRGSI
241 FIDRAFVSKT MEIFKAANPD DYNMKLHLQR NFLSEILGKG DIKINHLSAV GERLKNQKVL
301 IFIDDFDDQV VLEALVGQTQ WFGSGSRIVV VTNDKQYLRA HGINHIYEVY LPTEELAVEM
361 LCRSAFRKKA APEGFEELVA KVTGLAGSLP LGLNVLGSSL RGRDKEYWMD LLPRLQNGLD
421 GKIEKTLRVS YDGLTSEEDK ALFRHIACLF QWEKVTYLKL LLADSGLSVT VGLENLADKS
481 LIHVREDYVK MHRLLEEMGR GIVRLDEPEK REFLVDAQDI CDVLSQDTGT HKILGIKLNI
541 DEVDELNVHE NAFKGMRNLR FLEIHSQTRY EIGKEEVTIH LPENFDYLPP KLKILDWFGY
601 PMRCLPSKFR PEKLVKLKMV NSKLEKLWEG IVSLTCLKEM DMWGSQNLIE MPDLSKATNL
661 ETLYLEDCFS LVKLPSSIPH PNKLKKLNLR NCRNVETIPT GISLKSLKDL NTKGCSRMRT
721 FPQISSTIVD VDIGATSIEE IPSNLSLCFE NLNSFKMHSQ KKLSERVQLL TLLTPFMSPS
781 LSFLDLSDNP GLVELPSSFK NLHNLSTLKI RNCVNLETLP TGINLGSLER VDLRGCSRLR
841 TFPDISTNIK NLDLSETAIE DIPCWIEKFS RLISLQMKGC NNLEYVNLNI SKLKHLYEVD
901 FSDCKSLTGA SWNNRPRESA LSYYHSFYLC ITKCLNLDQE ALFQKKTYSV CLLRLSGEEV
961 PSYFTHRTTG TSSSLTIPLL HSCLSQPFLR FRACIVFDSH NETYSKCVFR FKGSFQNCSD
1021 SYNQAQDFCA VTEDYLIYSY EKDGCLFVLD YQMSQIPLEM NFDRLDLKIH IVDCYNAKIK
1081 GWGIRILEED CSSADNRLGY PNILPHVFEA DEGNMLNEAG ECGGK
//