LOCUS RID71162.1 1086 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3367
PROTEIN_ID RID71162.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03115"
/db_xref="Phytozome:Brara.C03115"
intron_pos 162:2 (1/5)
intron_pos 534:0 (2/5)
intron_pos 629:0 (3/5)
intron_pos 996:2 (4/5)
intron_pos 1050:1 (5/5)
BEGIN
1 MMASSSSSSS SLALIWLYHV FLSFRGEDVR KGFLSHVLKE FKSKGINVFI DNEIKRGQSV
61 GPELVKAIRH SRVAVVLLSR NYASSSWCLD ELVEIMKCRE EVGQTVLTIF YNVDPSEVRK
121 QTGDFGKAFD ETCVGKTEEL KQAWRQALND VAGIAGYHSS NCGNEADLIN KVASDVMAVL
181 GFTPSNDFDD FVGMGARVTE IKSKIILQSE LVKVIGIFGP AGIGKTTTAR VFYNQLSPYF
241 QFNTFLENIK GSYEKPCGND YQLKLRLQKN LLCQIFNQSD IEVRHLRGAQ EMLSDKKVLV
301 VLDEVDHWWQ LEEMAKQPGW VGPGSMIIIT TEDRKLLKAL GLGSDHIYKM KFPTSDESLQ
361 IFCQYAFGQK SPDDGFESLA REVTWLVGNL PLGLRVMGSY LRGMSKDEWI EALPWLRSTL
421 DREIESTLRF SYDALRDNEK TLFLHVACLF SVFYASIFKS YFANSSLEVN HGLEVLAQKS
481 LITIDHKHER VDMHILLEQM GREIVKKQST ENPGKRQFLT DTKDISHVLD EDTATGNVLG
541 IHLDTTWTGE EIQINKSAFQ GMNNLQFLSL FSYTIHTPEG LDCLPDKLIS LHWYSCPLRI
601 WPSKFSGKFL VDLVMQNSKF EMLWEGIKPL PGLKRLDLSF SRNLKKLPDL SEATSLEELR
661 LYKCKSLLEI TSSIGNATKL YRLDISGCEK IKDFPNVPDS IVELNMSETL IKEVPPWIDN
721 LLRLRELRMH LCKKLKTISP NISKLENLEF LALSNHAYHA CDDEDYTKYE YENVIEALIE
781 WGPDFKRSWI LESDLEKAFT SPISLRLCSS GIKTIPDCTR YLSGLIKLDV KECRELVALP
841 PLPHSLLSLD AQGCESLKTI DSSFQINPNI CLNFAKCYHL EKKARKLIYT SACKYAILPG
901 EEVPAHFTHR ASSGSLTISL TPRPLPSSFR FKACILLSKV HAHPGDTSDD DYNDEESESS
961 WTGTSCSIRG KQNGITVGGG SNQLRMPALY GNKEHLVDDE TCKVEGCGVR LIEANNESAG
1021 GEDEDEDDDD DDDGEGGEDE DDDYGEDDEV NTEANNETEG EESRSDEDEE TRSRKRMKLS
1081 SARFLE
//