LOCUS RID71069.1 907 aa PRT CON 13-SEP-2018
DEFINITION Brassica rapa hypothetical protein protein.
ACCESSION CM010630-3275
PROTEIN_ID RID71069.1
SOURCE Brassica rapa (field mustard)
ORGANISM Brassica rapa
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Brassiceae; Brassica.
REFERENCE 1 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE WGS assembly of Brassica rapa FPsc
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 25115505)
AUTHORS Bowman,J., Kohchi,T., Yamato,K., Jenkins,J., Shu,S., Ishizaki,K.,
Yamaoka,S., Nishihama,R., Nakamura,Y., Berger,F., Adam,C., Aki,S.,
Althoff,F., Araki,T., Arteaga-Vazquez,M., Balasubrmanian,S.,
Bauer,D., Boehm,C., Briginshaw,L., Caballero-Perez,J., Catarino,B.,
Chen,F., Chiyoda,S., Chovatia,M., Davies,K., Delmans,M., Demura,T.,
Dierschke,T., Dolan,L., Dorantes-Acosta,A., Eklund,D., Florent,S.,
Flores-Sandoval,E., Fujiyama,A., Fukuzawa,H., Galik,B.,
Grimanelli,D., Grimwood,J., Grossniklaus,U., Hamada,T.,
Haseloff,J., Hetherington,A., Higo,A., Hirakawa,Y., Hundley,H.,
Ikeda,Y., Inoue,K., Inoue,S., Ishida,S., Jia,Q., Kakita,M.,
Kanazawa,T., Kawai,Y., Kawashima,T., Kennedy,M., Kinose,K.,
Kinoshita,T., Kohara,Y., Koide,E., Komatsu,K., Kopischke,S.,
Kubo,M., Kyozuka,J., Lagercrantz,U., Lin,S., Lindquist,E.,
Lipzen,A., Lu,C., Luna,E., Martienssen,R., Minamino,N.,
Mizutani,M., Mizutani,M., Mochizuki,N., Monte,I., Mosher,R.,
Nagasaki,H., Nakagami,H., Naramoto,S., Nishitani,K., Ohtani,M.,
Okamoto,T., Okumura,M., Phillips,J., Pollak,B., Reinders,A.,
Roevekamp,M., Sano,R., Sawa,S., Schmid,M., Shirakawa,M., Solano,R.,
Spunde,A., Suetsugu,N., Sugano,S., Sugiyama,A., Sun,R., Suzuki,Y.,
Takenaka,M., Takezawa,D., Tomogane,H., Tsuzuki,M., Ueda,T.,
Umeda,M., Ward,J., Watanabe,Y., Yazaki,K., Yokoyama,R.,
Yoshitake,Y., Yotsui,I., Zachgo,S. and Schmutz,J.
TITLE Direct Submission
JOURNAL Submitted (22-JUN-2018) US DOE Joint Genome Institute, 400 Mitchell
Drive, Walnut Creek, CA 94598, USA
COMMENT ##Genome-Assembly-Data-START##
Assembly Method :: Meraculous v. May_2013
Assembly Name :: Brassica_rapa_FPsc_v1.3
Genome Coverage :: 155x
Sequencing Technology :: Illumina Hiseq
##Genome-Assembly-Data-END##
FEATURES Qualifiers
source /organism="Brassica rapa"
/mol_type="genomic DNA"
/cultivar="FPsc (B3)"
/db_xref="taxon:3711"
/chromosome="A3"
protein /locus_tag="BRARA_C03030"
/db_xref="Phytozome:Brara.C03030"
intron_pos 88:0 (1/22)
intron_pos 111:0 (2/22)
intron_pos 146:2 (3/22)
intron_pos 161:0 (4/22)
intron_pos 189:0 (5/22)
intron_pos 210:2 (6/22)
intron_pos 263:0 (7/22)
intron_pos 282:0 (8/22)
intron_pos 320:0 (9/22)
intron_pos 408:0 (10/22)
intron_pos 433:0 (11/22)
intron_pos 471:0 (12/22)
intron_pos 502:0 (13/22)
intron_pos 561:2 (14/22)
intron_pos 623:0 (15/22)
intron_pos 639:0 (16/22)
intron_pos 663:1 (17/22)
intron_pos 688:0 (18/22)
intron_pos 724:0 (19/22)
intron_pos 755:2 (20/22)
intron_pos 795:0 (21/22)
intron_pos 809:0 (22/22)
BEGIN
1 MLTSPSNALH STPHFWPIRR SRLLLRPRNF PRFHSGGANF CSLSLLSARS GPSPRFSVRA
61 LAGPDASEDG LAFPNHVSVK IPFGNREILV ETGLMGRQAS SAVTVTDGET IVYTSVCLAD
121 VPSEPSDFLP LYVHYQERFS AVGRTSGGFF KREGRTKDHE VLICRLIDRP LRPTMPKGFY
181 NETQILSWVL SYDGLHAPDA LAVTSAGIAV ALSEVPNSKA VAGVRVGLIG GEFIVNPTVK
241 EMEESQLDLF LAGTDSAILT IEGYSNFLPE EMLVRAVKVG QDAVQATCTA IEALAKKYGK
301 PKMVDAIRLP PPELYNHVKE LAGEELSKAL QIKSKIARRK AITSLEEKVL TILTEKGYVV
361 DEAAFGTTEA QPELLEDEDE DEEVVPEGEV DQGDVHIRPI PRKPIPLLFS EVDVKLVFKE
421 VSSKLLRRRI VEGGKRSDGR TPDGIRPINS RCGLLPRAHG SSLFTRGETQ ALAVVTLGDK
481 QMAQRIDNLE GSDEYKRFYL QYTFPPSSVG EVGRIGAPGR REIGHGTLAE RALETILPSD
541 DDFPYTIRVE STILESNGSS SMASVCGGCL ALQDAGVPVK CSVAGIAMGM VWDTEEFGGD
601 GSPLILSDIT GAEDASGDMD FKVAGNEDGV TAFQMDIKVG GITLEIMEKA LIQAKAGRRY
661 ILAEMAKCSP PPTLSLSKYA PLILIMKVHP SKVYSLIGSG GKKVKSIIEE SGVEGIDMQD
721 DGTVKIMAND IASLERAKAI ISGLTMVPAV GDIYRNCEIK SMAPYGAFVE IAPGREGLCH
781 VSELSAEWLA KPEDAYNIGD RIDVKLIEVN EKGQLRLSVR ALLPESESDK DSQKQPPTTG
841 DSTKSSPRKY VNPSLKDRAA TGASGEELVW KKKDVRKSSG GDKPMKSSSS SNEEDRDSLV
901 NGEATIS
//